PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G180319_P01
Common NameLOC100304121
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LBD
Protein Properties Length: 218aa    MW: 23124.1 Da    PI: 8.8317
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G180319_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260989.5e-3181081100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG++n++kl+ka   e  r++a+++l++eA++r  dP  G+++ +  l+++ + l+
  GRMZM2G180319_P01   8 ACAVCKHQRRKCEPNCELAAYFPAHRMNDFRALHLVFGVANLTKLIKANASEAgRRRAAETLTWEARWRECDPSDGCYREVACLRRDNAVLR 99 
                        7**********************************************9966666************************************** PP

             DUF260  92 aelallkee 100
                        ae a+l+++
  GRMZM2G180319_P01 100 AENAALRRQ 108
                        **9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.2887109IPR004883Lateral organ boundaries, LOB
PfamPF031956.8E-278105IPR004883Lateral organ boundaries, LOB
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009074anatomystyle
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020142anatomystem internode
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001180developmental stageplant proembryo stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MTGGGRGACA VCKHQRRKCE PNCELAAYFP AHRMNDFRAL HLVFGVANLT KLIKANASEA  60
GRRRAAETLT WEARWRECDP SDGCYREVAC LRRDNAVLRA ENAALRRQLA EQQLLWSSAC  120
STGGSALLAE QQLLPPCGGN NNGLLTASSR AHHAPAAALA ATHTALACYR GSMPVCTITM  180
TADDGSGRRP ASDAAAIAGR GSGAQVDASR DNKSSACR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-1521095111LOB family transfactor Ramosa2.1
5ly0_B2e-1521095111LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G180319
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G180319_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9732220.0EU973222.1 Zea mays clone 395148 ramosa 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001159074.11e-157ramosa 2
RefseqXP_008647993.11e-157ramosa 2 isoform X1
TrEMBLA0A3L6EF861e-156A0A3L6EF86_MAIZE; LOB domain-containing protein 2
TrEMBLB6U7K71e-156B6U7K7_MAIZE; Putative LOB domain-containing family protein
STRINGGRMZM2G180319_P011e-157(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130442833
Representative plantOGRP1421444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.13e-23LOB domain-containing protein 2
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]