PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G179366_P02
Common NameLOC100283491
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family BBR-BPC
Protein Properties Length: 350aa    MW: 38269.3 Da    PI: 10.1422
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G179366_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind335.21.7e-10233502301
          GAGA_bind   2 dddgsre.rnkgyyepaaslkenlglqlmssia.erdaki.............rernlalsekkaavaerd...................ma 59 
                        dddgs   rn+g+y+    +k nlglqlmss++ +rd+k+             +++ +   + +++ + rd                   m+
  GRMZM2G179366_P02   3 DDDGSLGiRNWGFYDT---MKGNLGLQLMSSMPpDRDTKPllpragflqqhghHNASH-QLHAQQSQHYRDstcgggasggmpteqhsihMD 90 
                        45677779******86...5************99***********9999866433333.4556677788889******************** PP

          GAGA_bind  60 flqrdkalaernkalverdnkllalllvensla.................salpvgvqvlsgtksi.dslqqlsepqledsavelreeekle 133
                        f +++++l+  +++ +++d+k+l+  ++  +                   +++p+g++++s+++++ +++q + e+ql++++    + ++  
  GRMZM2G179366_P02  91 FSRNEAWLHPSHHHQHPHDQKVLHSRPTVPAGHvghpghgshpvhgghivHHHPTGYGSISDAQHTlQMMQPQLESQLQEPPPC--KGDEAP 180
                        ************************998776665688999***********9******999987765166666999999998877..344456 PP

          GAGA_bind 134 alpieeaaeeakekkkkk...krqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqC 222
                         +pie++  +++  + kk    +q++++pk++k kk+kk  ++  +  + +++ +r++ +kk +++v+ng++lD ++lP+PvCsCtG+++qC
  GRMZM2G179366_P02 181 PPPIEDHSVVSTGPPVKKrqrGQQQSRQPKSPKPKKPKKV-AVLPEGGALNGHAPRRRGPKKAVGMVINGIELDLANLPTPVCSCTGTPQQC 271
                        7777777666655433330003577889999999999995.5666888889988************************************** PP

          GAGA_bind 223 YkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                        Y+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRiagrKmSqgafkk+LekLa+eGy+l np+DLk++WAkHGtnkfvtir
  GRMZM2G179366_P02 272 YRWGAGGWQSACCTTAISTYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLVNPIDLKTFWAKHGTNKFVTIR 350
                        ******************************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012269.0E-1781350IPR010409GAGA-binding transcriptional activator
PfamPF062174.3E-1133350IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDDDDGSLGI RNWGFYDTMK GNLGLQLMSS MPPDRDTKPL LPRAGFLQQH GHHNASHQLH  60
AQQSQHYRDS TCGGGASGGM PTEQHSIHMD FSRNEAWLHP SHHHQHPHDQ KVLHSRPTVP  120
AGHVGHPGHG SHPVHGGHIV HHHPTGYGSI SDAQHTLQMM QPQLESQLQE PPPCKGDEAP  180
PPPIEDHSVV STGPPVKKRQ RGQQQSRQPK SPKPKKPKKV AVLPEGGALN GHAPRRRGPK  240
KAVGMVINGI ELDLANLPTP VCSCTGTPQQ CYRWGAGGWQ SACCTTAIST YPLPMSTKRR  300
GARIAGRKMS QGAFKKVLEK LAGEGYNLVN PIDLKTFWAK HGTNKFVTIR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213219PKKPKKV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.130180.0ear| embryo| endosperm| meristem| ovary| root| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G179366
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:12795701}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G179366_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0683230.0BT068323.1 Zea mays full-length cDNA clone ZM_BFb0106H14 mRNA, complete cds.
GenBankEU9649220.0EU964922.1 Zea mays clone 282567 GAGA-binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149863.10.0uncharacterized protein LOC100283491
RefseqXP_023158048.10.0GAGA-binding protein isoform X1
SwissprotQ8GUC31e-132BBR_HORVU; Protein Barley B recombinant
TrEMBLA0A317YI590.0A0A317YI59_MAIZE; Protein Barley B recombinant
STRINGGRMZM2G179366_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.22e-61basic pentacysteine1