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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G179366_P02 |
Common Name | LOC100283491 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
BBR-BPC |
Protein Properties |
Length: 350aa MW: 38269.3 Da PI: 10.1422 |
Description |
BBR-BPC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G179366_P02 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GAGA_bind | 335.2 | 1.7e-102 | 3 | 350 | 2 | 301 |
GAGA_bind 2 dddgsre.rnkgyyepaaslkenlglqlmssia.erdaki.............rernlalsekkaavaerd...................ma 59
dddgs rn+g+y+ +k nlglqlmss++ +rd+k+ +++ + + +++ + rd m+
GRMZM2G179366_P02 3 DDDGSLGiRNWGFYDT---MKGNLGLQLMSSMPpDRDTKPllpragflqqhghHNASH-QLHAQQSQHYRDstcgggasggmpteqhsihMD 90
45677779******86...5************99***********9999866433333.4556677788889******************** PP
GAGA_bind 60 flqrdkalaernkalverdnkllalllvensla.................salpvgvqvlsgtksi.dslqqlsepqledsavelreeekle 133
f +++++l+ +++ +++d+k+l+ ++ + +++p+g++++s+++++ +++q + e+ql++++ + ++
GRMZM2G179366_P02 91 FSRNEAWLHPSHHHQHPHDQKVLHSRPTVPAGHvghpghgshpvhgghivHHHPTGYGSISDAQHTlQMMQPQLESQLQEPPPC--KGDEAP 180
************************998776665688999***********9******999987765166666999999998877..344456 PP
GAGA_bind 134 alpieeaaeeakekkkkk...krqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqC 222
+pie++ +++ + kk +q++++pk++k kk+kk ++ + + +++ +r++ +kk +++v+ng++lD ++lP+PvCsCtG+++qC
GRMZM2G179366_P02 181 PPPIEDHSVVSTGPPVKKrqrGQQQSRQPKSPKPKKPKKV-AVLPEGGALNGHAPRRRGPKKAVGMVINGIELDLANLPTPVCSCTGTPQQC 271
7777777666655433330003577889999999999995.5666888889988************************************** PP
GAGA_bind 223 YkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
Y+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRiagrKmSqgafkk+LekLa+eGy+l np+DLk++WAkHGtnkfvtir
GRMZM2G179366_P02 272 YRWGAGGWQSACCTTAISTYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLVNPIDLKTFWAKHGTNKFVTIR 350
******************************************************************************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 350 aa
Download sequence Send
to blast |
MDDDDGSLGI RNWGFYDTMK GNLGLQLMSS MPPDRDTKPL LPRAGFLQQH GHHNASHQLH 60 AQQSQHYRDS TCGGGASGGM PTEQHSIHMD FSRNEAWLHP SHHHQHPHDQ KVLHSRPTVP 120 AGHVGHPGHG SHPVHGGHIV HHHPTGYGSI SDAQHTLQMM QPQLESQLQE PPPCKGDEAP 180 PPPIEDHSVV STGPPVKKRQ RGQQQSRQPK SPKPKKPKKV AVLPEGGALN GHAPRRRGPK 240 KAVGMVINGI ELDLANLPTP VCSCTGTPQQ CYRWGAGGWQ SACCTTAIST YPLPMSTKRR 300 GARIAGRKMS QGAFKKVLEK LAGEGYNLVN PIDLKTFWAK HGTNKFVTIR
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Expression -- UniGene
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UniGene ID |
E-value |
Expressed in |
Zm.13018 | 0.0 | ear| embryo| endosperm| meristem| ovary| root| tassel |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:12795701}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT068323 | 0.0 | BT068323.1 Zea mays full-length cDNA clone ZM_BFb0106H14 mRNA, complete cds. |
GenBank | EU964922 | 0.0 | EU964922.1 Zea mays clone 282567 GAGA-binding protein mRNA, complete cds. |