PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G178102_P01
Common NameTIDP3177
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 953aa    MW: 103562 Da    PI: 8.0574
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G178102_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.69e-18122179457
                        -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          ++t+eq+e+Le+++ ++++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  GRMZM2G178102_P01 122 YVRYTPEQVEALERVYSECPKPSSLRRQHLIRDCpilrNIEPKQIKVWFQNRRCREKQ 179
                        6789****************************************************97 PP
2START160.21.5e-502714782204
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+++e+++ka+ ++ +Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +++l vi +g  g++
  GRMZM2G178102_P01 271 IAEETLAEFMSKATGTAVNWVQMVGMKPGPDSVGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRASWYRDCRHVDVLHVIPTGngGTI 361
                        68999*****************************************************.8888888888*********************** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l++++++al++l+  Rdf+++Ry+  l +g++vi+++S+++ +  p+   +++++Rae+lpSg+li+p+++g+s + +v+hv+l++ ++++
  GRMZM2G178102_P01 362 ELIYMQTYALTTLAEpRDFWTLRYTSGLDDGSLVICERSLTQSTGGPSgpnTPNFIRAEVLPSGYLIRPCDGGGSMIYIVDHVNLNACSVPE 453
                        **********998866****************************9999999***************************************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXXX CS
              START 180 llrslvksglaegaktwvatlqrqc 204
                        +lr+l++s  + ++k++ a+l++ +
  GRMZM2G178102_P01 454 VLRPLYESPKILAQKMTAAALRHIR 478
                        ********************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.916116180IPR001356Homeobox domain
SMARTSM003893.2E-14118184IPR001356Homeobox domain
CDDcd000863.21E-15121181No hitNo description
SuperFamilySSF466895.13E-16121182IPR009057Homeodomain-like
PfamPF000462.4E-15122179IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-17123179IPR009057Homeodomain-like
CDDcd146865.68E-6173212No hitNo description
PROSITE profilePS5084826.613261461IPR002913START domain
Gene3DG3DSA:3.30.530.203.4E-22269452IPR023393START-like domain
SMARTSM002341.5E-41270480IPR002913START domain
SuperFamilySSF559615.22E-36271481No hitNo description
PfamPF018522.1E-48271478IPR002913START domain
PfamPF086702.7E-39809952IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 953 aa     Download sequence    Send to blast
MKERERVTRK HLLLLQSSST VLLLNKPRAL LLLSSPPPHS TTAHSHPTRA QPPPTPYSLH  60
YSPRKHAQRH GHGGSAHGGL LLRLRFLSSP ALLAGPLATM AAVASRERLS PGAAPQVDAG  120
KYVRYTPEQV EALERVYSEC PKPSSLRRQH LIRDCPILRN IEPKQIKVWF QNRRCREKQR  180
KESSRLQTVN RKLSAMNKLL MEENDRLQKQ VSRLVFDNGY MKNRLHSPSV ATTDTSCESV  240
VTSGQHNQQQ NPAVLHPPQR DANNPAGLLA IAEETLAEFM SKATGTAVNW VQMVGMKPGP  300
DSVGIIAVSH NCSGVAARAC GLVSLEPTKV AEILKDRASW YRDCRHVDVL HVIPTGNGGT  360
IELIYMQTYA LTTLAEPRDF WTLRYTSGLD DGSLVICERS LTQSTGGPSG PNTPNFIRAE  420
VLPSGYLIRP CDGGGSMIYI VDHVNLNACS VPEVLRPLYE SPKILAQKMT AAALRHIRQI  480
AHESSGEMPY GAGRQPAVLR TFSQRLSRGF NDAVSGFPDD GWSCLLNTDG AEDITVTINS  540
SPNKLVGSHV SASPLFSAMG GGIMCAKASM LLQNVPPALL VRFLREHRSE WADPGIDAYS  600
VASLRANPYT VPGLRAGGFM GNQVILPLAR TLEHEESLEV IRLEGHGFSH EEVLMSRDMF  660
LLQLCSGVDE DAPGACAQLV FAPIDESFAD DAPLLPSGFR VIPLDAKTDV PTATTRTLDL  720
ASALEVGSGG SGMRASCDGS GTCATRSVLT IAFQFSFENH LRESVAAMAK QYVRGVMASV  780
QRVAMAIAPS RLGSRIELKH PPGSPEALAL ATWIGRSYRA HTGTEIRWSD TEGADSPLML  840
FWKHSDAILC CSLKPPAFTL KFANSAGFDI LETTMVNIQD LPLEAVLDEE GQKALSAQLP  900
AIMQQGLAYL PGGVCRSSMG RQASYEQAVA WKVVGDDGAP QCLALMLANW TFI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.314130.0ear| embryo| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G178102
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G178102_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0674830.0BT067483.1 Zea mays full-length cDNA clone ZM_BFc0058F09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142394.10.0uncharacterized protein LOC100274567
SwissprotA2ZMN90.0HOX33_ORYSI; Homeobox-leucine zipper protein HOX33
SwissprotQ2QM960.0HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33
TrEMBLC0PGR40.0C0PGR4_MAIZE; Homeobox-leucine zipper protein ATHB-14
TrEMBLF1DK260.0F1DK26_MAIZE; HB homeobox transcription factor (Fragment)
STRINGGRMZM2G178102_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Luan W, et al.
    Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice.
    Sci China Life Sci, 2013. 56(12): p. 1113-23
    [PMID:24302292]