PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G177110_P01 | ||||||||
Common Name | LOC100285965 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | LBD | ||||||||
Protein Properties | Length: 212aa MW: 21648.6 Da PI: 8.7216 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 91 | 1.5e-28 | 2 | 104 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf......paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C++lr++C++ Cvl+p + +++q +++a+v+k+FG++ +++ll+a+pe +r+++++sl+yeA r+ dPv+Gavg++ +++++ GRMZM2G177110_P01 2 SCNGCRMLRKGCSDACVLRPSLqwidggAEAQGHATAFVAKFFGRAGLMSLLTAVPEPQRPAVFQSLLYEAAGRTIDPVSGAVGLLGAGSWH 93 6*********************99999888999*********************************************************** PP DUF260 87 leqlkaelall 97 l+q+++e++l+ GRMZM2G177110_P01 94 LCQAAVETVLR 104 *****999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.759 | 1 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-24 | 2 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006807 | Biological Process | nitrogen compound metabolic process | ||||
GO:0060776 | Biological Process | simple leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MSCNGCRMLR KGCSDACVLR PSLQWIDGGA EAQGHATAFV AKFFGRAGLM SLLTAVPEPQ 60 RPAVFQSLLY EAAGRTIDPV SGAVGLLGAG SWHLCQAAVE TVLRGGAIAP LPESDSDGAR 120 RGASAVAARR AVGCSTFSTA KRAPASVGAP PEPSCDLGLW LSPGSPPATG ERRRRRRPGT 180 PSMTSEESVT TMSGGGGGGG GGREPELLNL FV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 170 | 177 | ERRRRRRP |
2 | 171 | 176 | RRRRRR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G177110 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G177110_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU974917 | 0.0 | EU974917.1 Zea mays clone 461098 seed specific protein Bn15D17A mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001152326.1 | 1e-125 | uncharacterized protein LOC100285965 | ||||
Swissprot | Q9FN11 | 1e-61 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
Swissprot | Q9SN23 | 1e-61 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A1D6F053 | 1e-147 | A0A1D6F053_MAIZE; Seed specific protein Bn15D17A | ||||
STRING | GRMZM2G177110_P01 | 1e-148 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4084 | 36 | 75 | Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 1e-58 | LOB domain-containing protein 37 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G177110_P01 |
Publications ? help Back to Top | |||
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