 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
GRMZM2G175232_P01 |
Common Name | LOC100382234, Zm.36608 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
Family |
MYB |
Protein Properties |
Length: 313aa MW: 33296.9 Da PI: 5.3685 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G175232_P01 | genome | MaizeSequence | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 52.5 | 1.1e-16 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W++eEde+l++ + ++G g+W+t+++ g+ R++k+c++rw +yl
GRMZM2G175232_P01 20 KGLWSPEEDEKLYNHIIRHGVGCWSTVPKLAGLQRCGKSCRLRWINYL 67
678*******************************************97 PP
|
2 | Myb_DNA-binding | 52.6 | 1.1e-16 | 73 | 117 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+++++E++l+v +++ lG++ W+ Ia++++ gRt++++k++w++
GRMZM2G175232_P01 73 RGSFSQQEEDLIVALHEILGNR-WSQIASHLP-GRTDNEIKNFWNSC 117
899*******************.*********.***********975 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 313 aa
Download sequence Send
to blast |
MGRLSCGGGG GGGVQPKLRK GLWSPEEDEK LYNHIIRHGV GCWSTVPKLA GLQRCGKSCR 60 LRWINYLRPD LKRGSFSQQE EDLIVALHEI LGNRWSQIAS HLPGRTDNEI KNFWNSCLKK 120 KLRQRGIDPA THKPVAAAEA SAALPDARDH DREPGGAGAG ADADGLAQQS KQPAAAVFDP 180 FPVVDFGFDL SGGGGVAALY GGPYDAAAGK ASADDGGFVA DYSSVLDVSE NLGYGESSSN 240 SSNWGNGAEM GNAAAAVLDG EVLHWAKPEP YTELEQRSAG QAAADDDALH HRFLLPCGQE 300 QSLAHLDFGL EYF
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Germinating seed and apical meristem of shoot and root. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | BT063597 | 0.0 | BT063597.1 Zea mays full-length cDNA clone ZM_BFc0084D02 mRNA, complete cds. |