PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G174347_P01
Common NameEREB92, ZEAMMB73_464455, Zm.84657
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 233aa    MW: 23879.8 Da    PI: 8.4628
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G174347_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.2e-203384156
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                       ++y+GVr ++ +gr++AeIrdp    k+ r++lg+++tae+Aa+a++aa+++++g+
  GRMZM2G174347_P01 33 PHYRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTYDTAEDAARAYDAAAREYRGA 84
                       68********.**********83...36**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.6E-143383IPR001471AP2/ERF domain
CDDcd000188.21E-193392No hitNo description
SuperFamilySSF541717.85E-233492IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-323491IPR001471AP2/ERF domain
SMARTSM003802.9E-343497IPR001471AP2/ERF domain
PROSITE profilePS5103224.0923491IPR001471AP2/ERF domain
PRINTSPR003675.8E-113546IPR001471AP2/ERF domain
PRINTSPR003675.8E-115773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MAPRTSEKTM APAAAAATGL ALSVGGGGGA GGPHYRGVRK RPWGRYAAEI RDPAKKSRVW  60
LGTYDTAEDA ARAYDAAARE YRGAKAKTNF PYPSCVPLSA AGCRSSNSST VESFSSDAQA  120
PMQAMPLPPS LELDLFHRAA AAATGTGAAA VRFPFGSIPV THPYYFFGQA AAAAAEAGCR  180
VLKLAPAVTV AQSDSDCSSV VDLSPSPPAA VSARKPAAFD LDLNCSPPTE AEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-233091163ATERF1
3gcc_A4e-233091163ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.846570.0ear| endosperm| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G174347
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G174347_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0177850.0BT017785.1 Zea mays clone EL01N0503H11.c mRNA sequence.
GenBankEU9527130.0EU952713.1 Zea mays clone 1287030 ethylene-responsive transcription factor 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146973.11e-166uncharacterized LOC100280582
TrEMBLB6SIZ81e-164B6SIZ8_MAIZE; Ethylene-responsive transcription factor 4
STRINGGRMZM2G174347_P011e-165(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.14e-18erf domain protein 9
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]