PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G173680_P01
Common NameLOC100191630, WRKY110
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 367aa    MW: 39340.8 Da    PI: 10.6693
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G173680_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.8e-31301358359
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeH h+
  GRMZM2G173680_P01 301 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEGEHSHT 358
                        9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.1E-19252297IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.0E-33287359IPR003657WRKY domain
PROSITE profilePS5081129.574294357IPR003657WRKY domain
SuperFamilySSF1182901.24E-26297359IPR003657WRKY domain
SMARTSM007741.3E-37299359IPR003657WRKY domain
PfamPF031061.6E-26301357IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEEVEVANMA AVESCHRVLA LLSQQQDPAL LKSVASETAE ACAKFRKVAA LLGSASGGGG  60
CGHARGRFSR RVRPLGLVNQ KSPLGIATGS GNPLEMMPST AAAAGSPSPP QSTSYAQMRA  120
RLSSAPESSR GLDLACSSSR CSPHPFGAPK LVQPLSVQFQ IGSVAHRYPF HQQQSRQKLQ  180
AEMFRRSNSG ISLKFDSPSP SGGAAGTMSS ARSFMSSLSI DRSMASLDGK RPFHLVGTPV  240
ASDPADAHRA PKRRCTGRGE DGRGKCATTG RCHCSKRRKL RIKRSIRVPA ISNKIADIPP  300
DEYSWRKYGQ KPIKGSPHPR GYYKCSSVRG CPARKHVERC VDDPAMLIVT YEGEHSHTQL  360
PAQPAQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-21287362276WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248253RAPKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.17500.0aerial organ| ear| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G173680
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G173680_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0337780.0BT033778.1 Zea mays full-length cDNA clone ZM_BFc0124G22 mRNA, complete cds.
GenBankBT0543090.0BT054309.1 Zea mays full-length cDNA clone ZM_BFb0279C06 mRNA, complete cds.
GenBankBT0843360.0BT084336.1 Zea mays full-length cDNA clone ZM_BFb0102N04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130531.10.0uncharacterized protein LOC100191630
TrEMBLA0A3L6FP940.0A0A3L6FP94_MAIZE; Putative WRKY transcription factor 21
TrEMBLB4F9J00.0B4F9J0_MAIZE; Putative WRKY transcription factor 74
STRINGGRMZM2G173680_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Representative plantOGRP18171541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.17e-64WRKY DNA-binding protein 21