PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G173534_P01
Common NamebHLH175, cl27985_1a
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 376aa    MW: 39316.2 Da    PI: 4.5362
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G173534_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.5e-12192234754
                        HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  GRMZM2G173534_P01 192 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 234
                        79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.764185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-16188250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-14191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9191234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.14E-13192239No hitNo description
Gene3DG3DSA:4.10.280.106.8E-16192247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550211.19E-5302373No hitNo description
CDDcd048732.41E-6306365No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MDDSAEVKLV DEITGEGGAA GDWGYLGSDG MGSGSYPAFP FSRDVLSTPT SASLLLSMDP  60
AALFDFNGTF PPSSAAAATA GSSLSAFHDF SCINPFDDAG HFLGAPPPVP AAAAPQQQGQ  120
KGGFFAPLPA SDFNDAGMSW DDEDEIDQSV DASSMAISAS MENAAGAVAG ASGAGGGSGR  180
GKKKGMPAKN LMAERRRRKK LNDRLYMLRS VVPKISKMDR ASILGDAIEY LKELLQRISD  240
LHNELESAPS SSLVGPTSAS FNPSTPTLQT FPGQVKEELC PGSFPSPTGQ QATVEVRMRE  300
GHAVNIHMFC ARRPGILLST MTALDSLGLD IEQAVISCFN GFAMDVFRAE CADGPGMVPE  360
EIKAVLMHTA GLHNAM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14187244663Transcription factor MYC2
5gnj_B1e-14187244663Transcription factor MYC2
5gnj_E1e-14187244663Transcription factor MYC2
5gnj_F1e-14187244663Transcription factor MYC2
5gnj_G1e-14187244663Transcription factor MYC2
5gnj_I1e-14187244663Transcription factor MYC2
5gnj_M1e-14187244663Transcription factor MYC2
5gnj_N1e-14187244663Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181199KKKGMPAKNLMAERRRRKK
2193200ERRRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.961390.0ear| embryo| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G173534
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G173534_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9744750.0EU974475.1 Zea mays clone 450274 inducer of CBF expression 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131774.20.0uncharacterized protein LOC100193144
TrEMBLB6UB600.0B6UB60_MAIZE; BHLH transcription factor
STRINGGRMZM2G173534_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.46e-99bHLH family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]