PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

bZIP

Protein Properties

Length: 193aa MW: 20329.3 Da PI: 10.7826

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G171912_P02	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.1	7e-12	103	163	2	62
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ke r +r+ +NR++A+ R+RKka++ eLe ++k Le N +L +++++l++e +l++ GRMZM2G171912_P02 103 KEQNRLKRLLRNRVSAQQARERKKAYLTELEARAKDLELRNAELEQRVSTLQNENNTLRQI 163 78899***************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.0E-13	102	166	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.1E-10	103	164	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.162	104	167	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.56E-11	107	164	No hit	No description
CDD	cd14704	2.48E-14	107	157	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.0E-16	107	166	No hit	No description
PROSITE pattern	PS00036	0	109	124	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MAAQEQEHEK QQAKTSTTSS LPSSSERSSS SAPNNLREGA EAAGAGVESD EEIRRVPELG 60 GASASASASS GAGKEDGARA VAAGAQGHPP AAGKKRGRAP GDKEQNRLKR LLRNRVSAQQ 120 ARERKKAYLT ELEARAKDLE LRNAELEQRV STLQNENNTL RQILKNTTAH ASKRSGGGGK 180 GGDGGKKHHF AKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	98	GKKRGRA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.85964	1e-129	ear\| endosperm\| meristem\| shoot\| tassel

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G171912

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269\|PubMed:15178762}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G171912_P02

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT017937	1e-138	BT017937.1 Zea mays clone EL01N0520G04.c mRNA sequence.
GenBank	EU976642	1e-138	EU976642.1 Zea mays clone 986002 transcription factor HY5 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008655674.1	2e-91	transcription factor HY5
Swissprot	Q9SM50	5e-47	HY5_SOLLC; Transcription factor HY5
TrEMBL	A0A3L6DNP9	4e-90	A0A3L6DNP9_MAIZE; Transcription factor HY5
TrEMBL	K7VQH0	4e-90	K7VQH0_MAIZE; Putative bZIP transcription factor superfamily protein
STRING	GRMZM2G171912_P02	1e-132	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1408	38	111
Representative plant	OGRP2081	17	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11260.1	2e-34	bZIP family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G171912_P02

Publications ? help Back to Top
Wang F, et al. Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato. Plant Physiol., 2018. 176(2): p. 1311-1326 [PMID:29146776] Liu CC, et al. The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato. Plant Cell Environ., 2018. 41(8): p. 1762-1775 [PMID:29566255]