PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G171600_P01
Common NameLOC100384320
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family CAMTA
Protein Properties Length: 842aa    MW: 94651.3 Da    PI: 6.9262
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G171600_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11728.7e-54181305117
               CG-1   5 kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                        k+rwlk++e+++iL+n+e ++++++++++p+sgs++L+nr+++ryfr+DG++w+kk++gkt++E+he+LKv++v++l+cyYa++++nptfqr
  GRMZM2G171600_P01  18 KTRWLKPQEVLKILQNHELFTISHKPPQKPQSGSWFLFNRRVLRYFRNDGFEWQKKRNGKTINEAHERLKVDNVDALNCYYARGDKNPTFQR 109
                        89****************************************************************************************** PP

               CG-1  97 rcywlLeeelekivlvhylev 117
                        r+yw+L+ ++e+ivlvhy++v
  GRMZM2G171600_P01 110 RIYWMLDPAYEHIVLVHYRDV 130
                        ******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143774.88710136IPR005559CG-1 DNA-binding domain
SMARTSM010764.5E-6613131IPR005559CG-1 DNA-binding domain
PfamPF038593.5E-4818130IPR005559CG-1 DNA-binding domain
CDDcd001026.61E-6305390No hitNo description
Gene3DG3DSA:2.60.40.103.2E-6305390IPR013783Immunoglobulin-like fold
PfamPF018332.3E-5306387IPR002909IPT domain
SuperFamilySSF812965.76E-13306388IPR014756Immunoglobulin E-set
SuperFamilySSF484033.42E-14508604IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.4E-14509608IPR020683Ankyrin repeat-containing domain
SMARTSM002481200510539IPR002110Ankyrin repeat
PROSITE profilePS5029716.228510575IPR020683Ankyrin repeat-containing domain
PfamPF136371.7E-9512564No hitNo description
CDDcd002041.32E-8512560No hitNo description
SMARTSM002483.3E-4543572IPR002110Ankyrin repeat
PROSITE profilePS5008810.927543575IPR002110Ankyrin repeat
SuperFamilySSF525401.09E-5705755IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.032707729IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.089708737IPR000048IQ motif, EF-hand binding site
PfamPF006120.044709728IPR000048IQ motif, EF-hand binding site
SMARTSM000150.023730752IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.993731759IPR000048IQ motif, EF-hand binding site
PfamPF006120.092734752IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MQQQQQGLDI GKLQEVVKTR WLKPQEVLKI LQNHELFTIS HKPPQKPQSG SWFLFNRRVL  60
RYFRNDGFEW QKKRNGKTIN EAHERLKVDN VDALNCYYAR GDKNPTFQRR IYWMLDPAYE  120
HIVLVHYRDV LEGSISVSAR NDSSTLNQNG SASRAEVHSS PGWTSELIAH CTNSCSPGSA  180
EEVSSQISAS ESDLIQHKAA LRKLKMQLSL EDKEDCDVNA EDVPADNEPI ILPVIQNEEP  240
GTSRNHDDIF DVLDFSEDHI NGTGTHPCHS AIDVLKNSDT WLEDDQLEAI LHPACMTLTE  300
NQWFRIHEVS PESAFSYEST KVIIVGDFLC NPPHSSWQVL FGDVKVCVEI IQQGVIRCHT  360
PCLDAGKVRM CLLDGNGKSC SEAREFEFLE KPTKCMIDGN TNPCNEAQDV KLHQIPTKSS  420
EELSLLLHYV HTLFDGHASG LFSNFSLPLQ NLGCGIQSNQ MDVMKKAYKQ LDPENVVSSV  480
MEVLLNDKFK QWLSSKCEQN IDGDHLLPKQ YRNIIHTVAA LGYDLALKPL LSSGVPINYR  540
DANGWTALHW AARFGREDMV VALLTAGAAA GALSHPTSED PAAKTPASIA LAYGFKGLSA  600
FLSEAQLTTH LDSIESKENG KLDSREEGIC RAVDRISDKS SHVHGGTDDQ LALKDSLGAV  660
RNAVQAAGRI QAAFRIFSFK KKKEMALGNR NSCCLSISEA GAVSHDMLEK AVLSIQKNFR  720
CWKKRKEFLK MRNNVVRIQA RVRAHQERNK YKELISSVGI LEKVMIRWYH KGVGLRGFNS  780
GAMTIDEEVD EDVAKVFRKL RVETAIDEAV SRVSCIIGSP KAMHQYRRML NRYQQTKDDQ  840
EK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.215690.0meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G171600
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G171600_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0697960.0BT069796.1 Zea mays full-length cDNA clone ZM_BFb0283K05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001352631.10.0uncharacterized protein LOC100384320
TrEMBLA0A1D6N2T20.0A0A1D6N2T2_MAIZE; Calmodulin-binding transcription activator 4
STRINGGRMZM2G171600_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94073440
Representative plantOGRP1440644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-114Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]