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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G171464_P01 | ||||||||
Common Name | bHLH131, ZEAMMB73_814989 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 205aa MW: 23047.5 Da PI: 11.459 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.3 | 8.6e-11 | 130 | 167 | 1 | 41 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKa 41 +r++h ++Er+RR+ +N+ ++ Lr+l+P++ + +++s a GRMZM2G171464_P01 130 QRMTHIAVERNRRRLMNDHLASLRSLIPSS---YIPRVSHA 167 79***************************8...66666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.52E-9 | 121 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.38E-5 | 128 | 160 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.3E-9 | 128 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.398 | 129 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.5E-8 | 130 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MERMQLQGPI ASSLWTDKQQ VVASTSAAMA AQMPFLALLQ GAGVVVEGAE TEQQQYEHEH 60 DGRKRQALAR AVSKLDLLES CLTQAAAPAA AACAPVASRT TERRMKRPRT RARAAPPPEK 120 RRKPEEAESQ RMTHIAVERN RRRLMNDHLA SLRSLIPSSY IPRVSHAMQS PCMHAAFRFD 180 LTTQRLHAMQ CRATRLRWWA VRSTT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 141 | RMTHIAVERNRR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G171464 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G171464_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727944 | 0.0 | KJ727944.1 Zea mays clone pUT6040 bHLH transcription factor (bHLH131) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002468617.2 | 4e-58 | transcription factor bHLH57, partial | ||||
TrEMBL | K7WHF4 | 1e-146 | K7WHF4_MAIZE; BHLH transcription factor (Fragment) | ||||
STRING | GRMZM2G171464_P01 | 1e-147 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7957 | 33 | 44 |
Representative plant | OGRP253 | 15 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46810.1 | 6e-13 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G171464_P01 |