PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G169709_P01
Common NameZ214A02.27, ZEAMMB73_427728
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family E2F/DP
Protein Properties Length: 354aa    MW: 39245 Da    PI: 8.6175
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G169709_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP38.81.5e-121431861159
            E2F_TDP  11 qkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnli 59 
                        ++f+ l+++ + + + l+e+ak L   +v  +rRRiYDi+NVLe+++ +
  GRMZM2G169709_P01 143 TSFMVLYNRDNVESIGLDEAAKCL---SV--ERRRIYDIVNVLEGVGHV 186
                        578999999888************...99..**************9866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.77E-7138186IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.0E-5139255IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.5E-11142185IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.3E-9144186IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF561121.17E-5244297IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.201.3E-6245268No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016310Biological Processphosphorylation
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016301Molecular Functionkinase activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDVDSRMATE SDSDSDARGG SGSGSETPTT SSSPSVVSLA PTASSSPSPS THPTPRRTAA  60
RSRPSSRRWR APRPGDRPLA RGEALPCPSL NPVLPPPPST LPPHIPRTPR DESVHARVWI  120
HGWSPRCSRM MVSVMSLLKT ELTSFMVLYN RDNVESIGLD EAAKCLSVER RRIYDIVNVL  180
EGVGHVAPPL RICLYDNCHP HIPNRRCPPL TRFLTSLTGD FSKGYNKWWS RNPNGVPLES  240
LGYKQAGIPH LKWFGVEGQY NVMVIDLLGP SLKGLFNYCS RKFSLKTVLM LADQMCLSNQ  300
EQIVELLERE KLEKKLQDPA AEPICLPIEF LKAITCNFST ERELGRCFGV DMVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3sv0_A3e-1924729664113Casein kinase I-like
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.828192e-69aerial organ| ear| endosperm| meristem| pericarp| pollen| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G169709
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G169709_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5309510.0AY530951.1 Zea mays putative growth-regulating factor 1 (Z214A02.12), putative 40S ribosomal protein S8 (Z214A02.25), and putative casein kinase I (Z214A02.27) genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ6QP490.0Q6QP49_MAIZE; Putative casein kinase I
STRINGGRMZM2G169709_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.16e-13DP-E2F-like 1
Publications ? help Back to Top
  1. Swigonov
    Close split of sorghum and maize genome progenitors.
    Genome Res., 2004. 14(10A): p. 1916-23
    [PMID:15466289]
  2. Lai J, et al.
    Gene loss and movement in the maize genome.
    Genome Res., 2004. 14(10A): p. 1924-31
    [PMID:15466290]