PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G165042_P01
Common NameLOC100281419
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 562aa    MW: 57202.3 Da    PI: 6.5762
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G165042_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.58.6e-17337383455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  GRMZM2G165042_P01 337 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 383
                        6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.51E-21331394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.457333382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.15E-17336387No hitNo description
PfamPF000104.2E-14337383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-21337391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-18339388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MNQFVPDWSN MGDTSRPLGE EDDLIELLWC NGHVVMQSQS HRKVPPRPEK AAAVAAPPAP  60
ASVPQEDEGG LWFPFALADS LDKDIFSEFF CEAPTPAPAA ADAAPAASGG GTGTEAGGKS  120
CGGDVPVPAE DDRRGGGGAC AVSAGDPCDL MPPPKSTPAS CSRQQTTMSL ANGGDNAGGD  180
LPGLVRAGAE AGASSMLSAI GSSICGSNQV LVQRAACAPG RASASGSGTA RGDGSGSAAL  240
PSAVGSANAN AVGGGRGHEA SSSGRSNYCC FGAATTTTTT TTTEPASTSN RSSKRKRLDT  300
EDSESPSEDA ESGSAAMLAR KPPQKMTTAR RSRAAEVHNL SERRRRDRIN EKMRALQELI  360
PHCNKTDKAS MLDEAIEYLK SLQLQVQMMW MGSAGIAAPP AVMFPGVHQY LPRMGVGMGA  420
AAAAALPSMP RLPFMAPQPV VPSAPVSVGP VPAYRGHMPA VGITEPYGHY IGVNHLQPAP  480
PPPQVQGVSY YPPPLGATAK AVQQAAELHH VPGPGGSIMP AGAAPGVLLP ESAQGRGPGT  540
VPCAPPFSSS ASVFGLQMGA LR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1341346ERRRRD
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G165042
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G165042_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9566450.0EU956645.1 Zea mays clone 1569257 PIL5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001348423.10.0uncharacterized protein LOC100281419
TrEMBLB6SV800.0B6SV80_MAIZE; PIL5
STRINGGRMZM2G165042_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.25e-35phytochrome interacting factor 3