PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G164909_P01
Common NameLOC100286024, Zm.123378
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HSF
Protein Properties Length: 414aa    MW: 44382.8 Da    PI: 7.2774
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G164909_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.23.5e-35721632102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++d++++++isw+++g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+l
  GRMZM2G164909_P01  72 FLTKTYQLVDDPAVDDVISWNDDGSAFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEKRL 154
                        9*****************************************************************99.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i+r+k 
  GRMZM2G164909_P01 155 LCDIHRRKV 163
                        ******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.3E-3862156IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-5968161IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.62E-3569161IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-3172161IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-207295IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-20110122IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340111135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-20123135IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MLRDRKLPES TSTTFLSLSH SSCATVHPSP IRGAAMVAEQ ATTTVAVGEP PTATPQPAAA  60
AAAGQRSVPT PFLTKTYQLV DDPAVDDVIS WNDDGSAFIV WRPAEFARDL LPKYFKHNNF  120
SSFVRQLNTY GFRKIVPDRW EFANDCFRRG EKRLLCDIHR RKVTLPVAAA TRAVTVVATI  180
PMALPVDSPV YSGEEQVLSS SSSPEPPSLL QQQPTPSASG SGDMGEENER LRRENAWLAR  240
ELGQMKKLCN NILLLMSKYA ATKQPDAAKA AAAGNCSGGE SSGAAAAPPL PSILELLPSC  300
RRDPASAAVD AAAAAAGTEH EVDEKAGARL FGVSIGRKRM RDESSGHGGG GEDPVGRSAE  360
VKAEPVDARL DHQHSATEPQ SWPIYRPRPV YHPLRACSGL VSAGSDHDWS NNSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-275716415131Heat shock factor protein 1
5d5v_B1e-275716415131Heat shock factor protein 1
5d5v_D1e-275716415131Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1233780.0endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G164909
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G164909_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9752200.0EU975220.1 Zea mays clone 484753 heat shock factor protein 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152384.20.0heat shock factor protein 7
SwissprotQ6Z9C81e-140HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLA0A1D6KL410.0A0A1D6KL41_MAIZE; Heat shock factor protein 7
TrEMBLA0A317YGR10.0A0A317YGR1_MAIZE; Heat stress transcription factor B-2b
STRINGGRMZM2G164909_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.18e-64heat shock transcription factor B2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  3. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]