PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G164359_P01
Common NameLOC100279943, ZEAMMB73_483690
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 331aa    MW: 36134 Da    PI: 7.8399
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G164359_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.5e-12190215126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        y   +C+++ +tG+C yGd+CkF+H+
  GRMZM2G164359_P01 190 YQPDICKDYKETGYCGYGDSCKFMHD 215
                        67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.83E-9187220IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878189217IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7189216IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-10190215IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-12190220IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.108.6E-14253313IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.14E-13265308No hitNo description
PfamPF139201.7E-8265306No hitNo description
SMARTSM001845.2E-5266303IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.689266304IPR001841Zinc finger, RING-type
CDDcd001629.26E-8266307No hitNo description
PROSITE patternPS005180281290IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MADGGNCGPG GGNASAPVCS FVRKPPKNIR KRPAAPAGSD DDDDGGGGAL AAARSKKGPP  60
SSTAGKLVFS TAGASSEAPR FQYESSRTIQ STDTRATATL ETETEFDRDA RSIRERQLKQ  120
AEESLKKNPS AVAASASAST AGEVYKGIHG YTDYKAGFRR EHTVSSEKAG GSHGPLRASA  180
HIRLSQRFDY QPDICKDYKE TGYCGYGDSC KFMHDRGDYK SGWQLEKEYE EAEKARKRRI  240
AMGGGGESDD EAADDEDEEE ALPFACFICR EPFVDPVVTK CKHYFCEHCA LKHHSKNKKC  300
YVCNKPTLGI FNAAQEIRKK MAQDKKQQQQ E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M3e-6285321105317RING finger protein 113A
5z58_M3e-6285321105317RING finger protein 113A
6ff4_t3e-6285321105317RING finger protein 113A
6ff7_t3e-6285321105317RING finger protein 113A
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.267570.0ear| meristem| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G164359
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G164359_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0415240.0BT041524.1 Zea mays full-length cDNA clone ZM_BFc0009J09 mRNA, complete cds.
GenBankBT0551740.0BT055174.1 Zea mays full-length cDNA clone ZM_BFc0109L02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146365.10.0putative RING zinc finger domain superfamily protein
SwissprotQ6K4V31e-164C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15
TrEMBLB4FWN60.0B4FWN6_MAIZE; Zinc finger CCCH domain-containing protein 1
TrEMBLK4JFL00.0K4JFL0_MAIZE; C3H-type transcription factor (Fragment)
STRINGGRMZM2G164359_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80713645
Representative plantOGRP58961720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-108C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]