PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G164082_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 420aa    MW: 44573.1 Da    PI: 9.9592
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G164082_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.85.9e-30347405259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D y+WrKYGqK++kgs++pr+YYrC+s+ +Cp++k+ver+++d  ++++tYe++Hnh 
  GRMZM2G164082_P01 347 ADNYSWRKYGQKPIKGSPHPRGYYRCSSKkDCPARKHVERCRSDAAMLIVTYENDHNHA 405
                        69**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.4E-14306344IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.6E-33334407IPR003657WRKY domain
PROSITE profilePS5081130.687341407IPR003657WRKY domain
SuperFamilySSF1182903.01E-26342407IPR003657WRKY domain
SMARTSM007744.5E-36346406IPR003657WRKY domain
PfamPF031069.0E-26348404IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009074anatomystyle
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025287anatomyseedling coleoptile
PO:0001052developmental stagevascular leaf expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MEAVEEANRA AVESCKKLVA VLSLSGGDAF RPMPVAAETD EAVARFGKVV AVLSGRLGHA  60
RARVGKRSPA PPVVDASCLL DHPSLAVAPR HTPNGGHLLL SATTPPLPPL PPHLLPPASM  120
AMRSAAVPMT MRSQEAAPAP AVLLVPPCAS NVTLTPAKKF DRSMFLETPL LELNSCGVPP  180
SPSASPAMAA VQRNSTKVAA AVPAPNPCTS APRIQFHPPH QQQQQAAKKQ KSFQFDQTPS  240
GEQFHIEVPV PLPRAAPAAK EVISFSFDNN SVCTSSAATS FFTSIGSQLI SMSDAATSSA  300
ATAKKACGKR AEDSSGVRCH CPKKKKPREK RVVRVPAISD KNADIPADNY SWRKYGQKPI  360
KGSPHPRGYY RCSSKKDCPA RKHVERCRSD AAMLIVTYEN DHNHAQPLDP SVLTAANAEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-193444071274WRKY transcription factor 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G164082
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G164082_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432523e-96AC243252.2 Panicum virgatum clone PV_ABa094-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008665604.10.0protein WRKY1-like
TrEMBLA0A317YLS80.0A0A317YLS8_MAIZE; Putative WRKY transcription factor 7
STRINGGRMZM2G164082_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127053036
Representative plantOGRP1390644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.12e-37WRKY DNA-binding protein 7