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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G163427_P01 | ||||||||
Common Name | LOC103652667, ZEAMMB73_542861, Zm.22400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GRAS | ||||||||
Protein Properties | Length: 765aa MW: 84654.3 Da PI: 5.1643 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 343.7 | 3e-105 | 384 | 756 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 l++ L++cA+ v++gd + a ++L+++++++sp+gd++qRla++f+ +L+arla+++s+ y++l +++ts ++e l+a++l+ +s ++k GRMZM2G163427_P01 384 LRTMLIHCAQSVATGDRRSAAEVLKQIKHHSSPKGDATQRLAHCFAMGLEARLAGTGSQAYQSLMAQHTS---VVEFLKAYSLYMAASCFMK 472 5789************************************************************999999...******************* PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182 + ++ N +I +av+g +++Hi+ +++++G+Q+p L++ La R++gpp++R+T+++ p++g ++++eetg+rL+++A+e+gvpf+f+ + GRMZM2G163427_P01 473 VRFIFSNMTICNAVAGRSKLHIVEYGVQHGFQYPGLFHLLARREGGPPEVRVTAIAVPQPGfrPAHQIEETGRRLSNIAREMGVPFKFRG-I 563 ************************************************************9*9***************************.7 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 a ++e+++ ++L+++p+E+laVn+ + +l+desv ++s +rd+vL+ +++++P+v+v++ + ++++ Fl+rf eal ++sa fd+++ GRMZM2G163427_P01 564 AAKWEAVRAKDLNIDPDEVLAVNSECYIGNLMDESVLVDSpsPRDTVLNNIREMRPNVFVHTVVNGTYGAPFFLTRFREALFFFSAQFDMID 655 99*********************************98877779************************************************* PP GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364 a++pr+++er +Er ++g + nv+acega+r+er et+++W+ r ++aG++++pl+ +++k + +++++ + + ++e++ +l+lgWk+ GRMZM2G163427_P01 656 ATIPRDNNERLLIERDIFGTFALNVIACEGADRVERPETYKQWQVRNHRAGLRQLPLNPEVVKASRDKVKNYYHRDFLIDEDNRWLLLGWKG 747 *************************************************************************999**************** PP GRAS 365 rpLvsvSaW 373 r L+++S W GRMZM2G163427_P01 748 RVLYAMSTW 756 ********* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.983 | 358 | 737 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.0E-102 | 384 | 756 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 765 aa Download sequence Send to blast |
MSATPEDFLG APYLAAPEPF SPSVFLDLPP TPERPDNSDD LVLPYIAQML MEEDIDDKFF 60 YQFPDHPALL TAQQPYAQIL SDSATATATS SSSDSANATS SSSASGTGGN STLSPSSDAP 120 AGWPYDDALD ISHLLRSPTY PATHMMGVGL DDFAELLTPP QGQGEAQRQQ SSLAALSDGA 180 EEEDGSTKAE ATTTFPVGDA DHAALASAFF GAQNGGDTDM LNMAFLKGME EAKKFLPTNN 240 SLLIGLDETS CKSLPKDRYI KPYTAFAATQ VKEEEEHVVV HGNGMPMFGG SRSTNGRVRK 300 NHRAEGDDLE AETGRSSKLM MPEQEETGAN ELYDEIMNCT YEGFMKRMED LRIAMDSESE 360 KSARKVSRKG ARGRQQLVNE VVDLRTMLIH CAQSVATGDR RSAAEVLKQI KHHSSPKGDA 420 TQRLAHCFAM GLEARLAGTG SQAYQSLMAQ HTSVVEFLKA YSLYMAASCF MKVRFIFSNM 480 TICNAVAGRS KLHIVEYGVQ HGFQYPGLFH LLARREGGPP EVRVTAIAVP QPGFRPAHQI 540 EETGRRLSNI AREMGVPFKF RGIAAKWEAV RAKDLNIDPD EVLAVNSECY IGNLMDESVL 600 VDSPSPRDTV LNNIREMRPN VFVHTVVNGT YGAPFFLTRF REALFFFSAQ FDMIDATIPR 660 DNNERLLIER DIFGTFALNV IACEGADRVE RPETYKQWQV RNHRAGLRQL PLNPEVVKAS 720 RDKVKNYYHR DFLIDEDNRW LLLGWKGRVL YAMSTWVAED NKPIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 4e-39 | 386 | 756 | 35 | 418 | Protein SHORT-ROOT |
5b3h_E | 4e-39 | 386 | 756 | 35 | 418 | Protein SHORT-ROOT |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G163427 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G163427_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008677824.1 | 0.0 | scarecrow-like protein 34 | ||||
TrEMBL | K7U8D6 | 0.0 | K7U8D6_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G163427_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 | Representative plant | OGRP266 | 15 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-148 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G163427_P01 |
Entrez Gene | 103652667 |