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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G162840_P01 |
Common Name | LOC100383806, ZEAMMB73_239235 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
Trihelix |
Protein Properties |
Length: 340aa MW: 36758.8 Da PI: 4.9809 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G162840_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 83.8 | 2.3e-26 | 29 | 128 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75
rWt+qe+l+Lie++r +e r +rg+ + +p+W++v++++r++g+er+p+qC+++w+nl+++ykk+ke+e+ +
GRMZM2G162840_P01 29 RWTRQEILVLIEGKRMVEGRGGRGArgraaaaaasgeasavaALEPKWAAVAEYCRRHGLERGPVQCRKRWSNLAGDYKKVKEWERAA---A 117
8*********************9877778888899999999889******************************************86...3 PP
trihelix 76 sstcpyfdqle 86
s+ p f ++
GRMZM2G162840_P01 118 ASREPSFWAMR 128
33557777775 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
GO:0050777 | Biological Process | negative regulation of immune response |
GO:0071219 | Biological Process | cellular response to molecule of bacterial origin |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 340 aa
Download sequence Send
to blast |
MSTAGDPAVA AAAAAAAATP SGRAPRLPRW TRQEILVLIE GKRMVEGRGG RGARGRAAAA 60 AASGEASAVA ALEPKWAAVA EYCRRHGLER GPVQCRKRWS NLAGDYKKVK EWERAAAASR 120 EPSFWAMRND ARRERRLPGF FDREVYDILE GRGRAIVDGR SARNAAAEQP APVRVDEDKE 180 AEVPEAVFDS GRPATEEALF SEDEEEEEED APPVAPPPPP PPVIAVPVSE KPEASRQQQS 240 AEQGTSKDTQ PEQSSERDAP AQQGGQKRPR TVEGAGEGTA DLESKLVEIL DRNSRLVAAQ 300 LEAQNQNCEL DREQRKDQAN SLVVVLGRLA DALGRIADKL
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT068332 | 0.0 | BT068332.1 Zea mays full-length cDNA clone ZM_BFb0102G16 mRNA, complete cds. |