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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G162709_P01 | ||||||||
Common Name | LOC100193925, MYB137 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB | ||||||||
Protein Properties | Length: 362aa MW: 39598.2 Da PI: 6.1289 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 2.8e-17 | 27 | 74 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl GRMZM2G162709_P01 27 RGPWTLEEDNLLMNYIACHGEGRWNLLARCSGLKRTGKSCRLRWLNYL 74 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.9 | 1.5e-15 | 81 | 123 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+ +eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ GRMZM2G162709_P01 81 GNLAPEEQLLILELHSKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 123 66669****************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.511 | 22 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.56E-30 | 24 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-13 | 26 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-15 | 27 | 74 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-22 | 28 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.75E-11 | 29 | 74 | No hit | No description |
PROSITE profile | PS51294 | 24.997 | 75 | 129 | IPR017930 | Myb domain |
SMART | SM00717 | 9.1E-14 | 79 | 127 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 81 | 123 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-23 | 82 | 128 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.26E-11 | 85 | 123 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MEGAMTTRSK HRRHEEDQEM TMVELRRGPW TLEEDNLLMN YIACHGEGRW NLLARCSGLK 60 RTGKSCRLRW LNYLKPDIKR GNLAPEEQLL ILELHSKWGN RWSRIAQHLP GRTDNEIKNY 120 WRTRVQKQAR QLRVDANSAV FRDAVRCYWM PRLLEKTMAA AAASTSGEVL LPPLPPPPQL 180 HPSRVAGLLA SSSSSPVQRD TSDSDYLPQR YHHHPVDPSP SASSTVSSSA ALAPVPCFSE 240 LSWVDQYGYG PYYSYGANLD DGAGVFDDSA ALEEGLGLDA LDLGPADDSD VAHSDATLLD 300 YLNSACAGGG TMMMAVTGGG GGVQSSGCGA TGGADADYRP SPCTWRTDEL GDPRQHQWGG 360 GI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 24 | 128 | 4 | 107 | B-MYB |
1gv2_A | 2e-25 | 24 | 128 | 1 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.20919 | 0.0 | meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G162709 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:19529828}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G162709_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063429 | 0.0 | BT063429.1 Zea mays full-length cDNA clone ZM_BFc0062O06 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001334575.1 | 0.0 | uncharacterized protein LOC100193925 | ||||
Swissprot | Q9C9G7 | 3e-78 | MYB62_ARATH; Transcription factor MYB62 | ||||
TrEMBL | A0A3L6FFG5 | 0.0 | A0A3L6FFG5_MAIZE; Transcription factor MYB62 | ||||
STRING | GRMZM2G162709_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 9e-79 | myb domain protein 62 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G162709_P01 |
Entrez Gene | 100193925 |
Publications ? help Back to Top | |||
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