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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G161512_P04 | ||||||||
Common Name | cl6449_1b | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB | ||||||||
Protein Properties | Length: 402aa MW: 43948.3 Da PI: 8.6434 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.9 | 3.2e-15 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed+ll d v+++G g+W+++ r+ + R++k+c++rw ++l GRMZM2G161512_P04 16 KGPWTQAEDKLLRDHVRRHGEGNWNAVRRETRLQRCGKSCRLRWANHL 63 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 40.8 | 5.2e-13 | 70 | 112 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++++eE+ +++ ++ + G++ W++I++++ gRt++++k++w++ GRMZM2G161512_P04 70 CPFSPEEERQILLLHGLIGNK-WARISKHLS-GRTDNEIKNYWNT 112 68*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.287 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-28 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-12 | 15 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.96E-11 | 18 | 63 | No hit | No description |
Pfam | PF13921 | 1.4E-13 | 19 | 79 | No hit | No description |
PROSITE pattern | PS00175 | 0 | 31 | 40 | IPR001345 | Phosphoglycerate/bisphosphoglycerate mutase, active site |
PROSITE profile | PS51294 | 22.935 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 5.0E-13 | 68 | 116 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.71E-10 | 71 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-21 | 71 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0009066 | anatomy | anther | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MARSGGGMEG SGGLKKGPWT QAEDKLLRDH VRRHGEGNWN AVRRETRLQR CGKSCRLRWA 60 NHLRPNLRKC PFSPEEERQI LLLHGLIGNK WARISKHLSG RTDNEIKNYW NTRFKRRQRA 120 GLPPYPPDVE RQIKLLRAQN VNPFADADAD AAHANASAGL PAPPLLYDVG NPFALLSSIP 180 SLSQTASHSH SPLINQNYPL LNQMQVFHHL GGSQQPSFHQ DGSAAAFGDI VSSRLPPLPT 240 ARTQAELHSN QFDTSISGGL VDQSMLIGDE HLLRPNPSMV KVSSMPALSY REPDGSRMLP 300 AHGAGSDGDV SSLGQCPPGQ DLHRGATWDF TFAAVKPAKR RTASEVGFSD MFAVAPPGDW 360 FGGGSTAPSP GPSSAVTDEE FNLEMQQFMS MLPLSDEHGW NA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-27 | 14 | 117 | 5 | 107 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.12370 | 0.0 | pollen |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G161512 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G161512_P04 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038723 | 0.0 | BT038723.1 Zea mays full-length cDNA clone ZM_BFb0313M23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008681371.1 | 0.0 | uncharacterized protein LOC100272446 isoform X1 | ||||
TrEMBL | A0A1D6GSP4 | 0.0 | A0A1D6GSP4_MAIZE; Myb domain protein 101 | ||||
TrEMBL | A0A3L6EMQ9 | 0.0 | A0A3L6EMQ9_MAIZE; Transcription factor GAMYB | ||||
STRING | GRMZM2G161512_P04 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12397 | 26 | 32 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11440.1 | 1e-53 | myb domain protein 65 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G161512_P04 |
Entrez Gene | 100272446 |