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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G160840_P01 |
Common Name | Zm.86184 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
MYB |
Protein Properties |
Length: 324aa MW: 35267.9 Da PI: 5.3839 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G160840_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 53 | 8e-17 | 46 | 93 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT +Ed +lv++++ G g+W++ ar g++Rt+k+c++rw++yl
GRMZM2G160840_P01 46 RGPWTVDEDHILVNYIADNGEGRWNSLARAAGLKRTGKSCRLRWLNYL 93
89********************************************97 PP
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2 | Myb_DNA-binding | 56.9 | 4.8e-18 | 99 | 142 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg++T++E++l++d+++++G++ W++Ia++++ gRt++++k++w++
GRMZM2G160840_P01 99 RGNFTADEQLLILDLHTRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 142
89********************.*********.***********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 324 aa
Download sequence Send
to blast |
MAATQSRGGG GVVPVQVDEE HGRRRQGGAA PQEEEEEAAE KPELRRGPWT VDEDHILVNY 60 IADNGEGRWN SLARAAGLKR TGKSCRLRWL NYLRPDVKRG NFTADEQLLI LDLHTRWGNR 120 WSKIAQHLPG RTDNEIKNYW RTRVQKHAKQ LNCDASSKRF KDAMRYLWMP HLVDATATAD 180 DEYHQHQAAA AGNIDGLLAG GDVDHVQHAL AAGVAAAMAS SSSDSLASEP YSYEDGGLLA 240 SLRAGDDMQL VMSGGGWAAA QAQEANDQGL WPSSSGHGLS SSVQAAAGGA GQFEDPELSG 300 WVQGFSDSII TGNLWALEEI WKMQ
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT069744 | 0.0 | BT069744.1 Zea mays full-length cDNA clone ZM_BFb0226N11 mRNA, complete cds. |
GenBank | KJ727638 | 0.0 | KJ727638.1 Zea mays clone pUT5565 MYB transcription factor (MYB100) mRNA, partial cds. |
Publications
? help Back to Top |
- Rabinowicz PD,Braun EL,Wolfe AD,Bowen B,Grotewold E
Maize R2R3 Myb genes: Sequence analysis reveals amplification in the higher plants. Genetics, 1999. 153(1): p. 427-44 [PMID:10471724] - Ahn IP,Kim S,Kang S,Suh SC,Lee YH
Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct. Phytopathology, 2005. 95(11): p. 1248-55 [PMID:18943354] - Campos-Soriano L,García-Martínez J,San Segundo B
The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection. Mol. Plant Pathol., 2012. 13(6): p. 579-92 [PMID:22212404] - Yokotani N, et al.
Role of the rice transcription factor JAmyb in abiotic stress response. J. Plant Res., 2013. 126(1): p. 131-9 [PMID:22847900] - Wang D, et al.
Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response. Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007 [PMID:26740780] - Fred AK,Kiswara G,Yi G,Kim KM
Screening Rice Cultivars for Resistance to Bacterial Leaf Blight. J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45 [PMID:26869604]
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