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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G160730_P01 |
Common Name | LOC100856890, ZEAMMB73_475046 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
AP2 |
Protein Properties |
Length: 249aa MW: 27613.2 Da PI: 10.3129 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G160730_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 58.5 | 1.7e-18 | 112 | 161 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta+ Aa+a+++a+ k++g
GRMZM2G160730_P01 112 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 161
78*******************......55************************998 PP
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2 | AP2 | 32.7 | 1.9e-10 | 204 | 245 | 1 | 46 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaa 46
s+++GV+++k g+W+A+I +k+++lg ++t+ eAa+ a
GRMZM2G160730_P01 204 SRFRGVTQHK-CGKWEARIGQlM----GKKYVYLGLYDTETEAAQHA 245
789*******.7******77733....25**********88**9987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top |
PO Term |
PO Category |
PO Description |
PO:0009009 | anatomy | plant embryo |
PO:0020142 | anatomy | stem internode |
PO:0001095 | developmental stage | plant embryo true leaf formation stage |
PO:0007001 | developmental stage | early whole plant fruit ripening stage |
PO:0007031 | developmental stage | mid whole plant fruit ripening stage |
PO:0007063 | developmental stage | LP.07 seven leaves visible stage |
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
Protein Sequence Length: 249 aa
Download sequence Send
to blast |
MAATRRAFFH SAVDGIARAG PGEAELLPAP PQVGRPVEGA SSMVFGFPVP RPTMPDSRPA 60 AVTQQFFPPT TTAAQQATME EQCHVPAGSA AEQWVRSSAS RKSRRGPRSR SSQYRGVTFY 120 RRTGRWESHI WDCGKQVYLG GFDTAQAAAR AYDQAAIKFR GLNADINFTL DDYKDEMKKM 180 KDLSKEEFVL VLRRQGAGFV RGSSRFRGVT QHKCGKWEAR IGQLMGKKYV YLGLYDTETE 240 AAQHANQGI
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |