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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G159032_P04 | ||||||||
Common Name | hdt103 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 259aa MW: 28094.4 Da PI: 4.3915 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00017 | 234 | 256 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+ksF + L+ H + H GRMZM2G159032_P04 234 PCKSCSKSFISETALQAHSKAkH 256 6*****************88777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 11.032 | 233 | 259 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 235 | 256 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MYVKIDDQKL AIGTLSVDKN PHIQFDLIFD KEFELSHTSK TTSVFFTGYK VEQPFEEDEM 60 DLDSEDEDEE LNVPVVKENG KADEKKQKSQ EKAVAAPSKS SPDSKKSKDD DDSDEDETDD 120 SDEDETDDSD EGLSPEEGDD DSSDEDDTSD DEEEDTPTPK KPEVGKKRAA ESSVLKTPLS 180 DKKAKVATPS SQKTGGKKGA AVHVATPHPA KGKTIVNNDK SVKSPKSAPK SGVPCKSCSK 240 SFISETALQA HSKAKHGGK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.856 | 0.0 | aerial organ| cell culture| ear| embryo| endosperm| meristem| ovary| pollen| root| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G159032 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G159032_P04 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU953071 | 0.0 | EU953071.1 Zea mays clone 1380088 histone deacetylase 2b mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105402.2 | 1e-180 | histone deacetylase HDT1 | ||||
Swissprot | Q9M4U4 | 1e-179 | HDT3_MAIZE; Histone deacetylase HDT3 | ||||
TrEMBL | A0A096SP83 | 1e-180 | A0A096SP83_MAIZE; Histone deacetylase HDT3 | ||||
STRING | GRMZM2G159032_P01 | 1e-180 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44750.2 | 7e-14 | histone deacetylase 3 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G159032_P04 |