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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
GRMZM2G158700_P01 |
| Common Name | Zm.13888 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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| Family |
MYB |
| Protein Properties |
Length: 303aa MW: 33333.7 Da PI: 6.2818 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GRMZM2G158700_P01 | genome | MaizeSequence | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 54.4 | 2.8e-17 | 31 | 78 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT +Ed ll+ v+ +G g+W+ ar g++Rt+k+c++rw++yl
GRMZM2G158700_P01 31 RGPWTVDEDALLAAHVAAHGEGRWNELARDAGLRRTGKSCRLRWLNYL 78
89********************************************97 PP
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| 2 | Myb_DNA-binding | 50.8 | 3.8e-16 | 84 | 127 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg +T+ E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
GRMZM2G158700_P01 84 RGGFTPREQLLILDLHSRWGNR-WSKIAAHLP-GRTDNEVKNYWRT 127
788*******************.*********.***********96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 303 aa
Download sequence Send
to blast |
MDALWNGSSC DWPAPTVIIS DDDAAAAELR RGPWTVDEDA LLAAHVAAHG EGRWNELARD 60
AGLRRTGKSC RLRWLNYLRP GVRRGGFTPR EQLLILDLHS RWGNRWSKIA AHLPGRTDNE 120
VKNYWRTRVQ KHAKQLHCDV GSRRFHDAMR NLWMPRLIER IHADDSAAVA ANATGDVSHF 180
YSASPSHELS SSSQPAPAYR NAAPNGSCAR APSPDASCVT GPSSWSREAS PASQFQSSGS 240
TIAGPSTSTE LCQNGCSSAT SVDMFDESWS ELLARANHDD TDFGLGETGD NWWGLEDIWE 300
QPL
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
| Publications
? help Back to Top |
- Alexandrov NN, et al.
Insights into corn genes derived from large-scale cDNA sequencing.
Plant Mol. Biol., 2009. 69(1-2): p. 179-94
[PMID:18937034] - Ahn IP,Kim S,Kang S,Suh SC,Lee YH
Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
Phytopathology, 2005. 95(11): p. 1248-55
[PMID:18943354] - Campos-Soriano L,García-Martínez J,San Segundo B
The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
Mol. Plant Pathol., 2012. 13(6): p. 579-92
[PMID:22212404] - Yokotani N, et al.
Role of the rice transcription factor JAmyb in abiotic stress response.
J. Plant Res., 2013. 126(1): p. 131-9
[PMID:22847900] - Wang D, et al.
Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
[PMID:26740780] - Fred AK,Kiswara G,Yi G,Kim KM
Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
[PMID:26869604]
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