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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G157679_P02 | ||||||||
Common Name | LOC100279528 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GRAS | ||||||||
Protein Properties | Length: 812aa MW: 89415.2 Da PI: 6.4786 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 389.8 | 3.1e-119 | 434 | 803 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 ++lL++cA+ v+++d + a++lL++++++asp+gd qRla++f+++L+arla+++s++yk+l +++ + +++l+a++l+ ++P+ k+ GRMZM2G157679_P02 434 ETLLVHCAQSVATDDRRGATELLKQIRQHASPNGDGDQRLAHCFANGLEARLAGNGSQIYKSLIMTRFP---CTDVLKAYQLYLAACPFKKI 522 789****************************************************************99...9******************* PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183 sh+ aNq+I++ave++++vHi+D++i +G+QWp+L+q L++Rp+gpp+lRiT+++ p++g +e++eetg+ L+++Ae+++vpfef++ + GRMZM2G157679_P02 523 SHFFANQTIMNAVEKAKKVHIVDYGIYYGFQWPCLIQRLSTRPGGPPRLRITAIDTPHPGfrPAERIEETGRYLKDYAETFNVPFEFRA-IP 613 **********************************************************99*****************************.7* PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275 +r+e++++e+L++ ++E l+Vn++++ ++l+desv es+r+ vL+++++++P+++++ + ++n++ F+ rf eal++ysa+fd+le+++ GRMZM2G157679_P02 614 SRFEAVQIEDLHIAKDELLIVNSMFKFKTLMDESVVAESPRNMVLSTIRKMNPHLFIHGIINGSYNAPFFASRFREALYHYSAIFDMLETNI 705 ******************************************************************************************** PP GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367 pr++e+r +E +l+gre+ nv++ceg er er et+++W+ r ++aGF+++p++++++k a+ +r +++d + ++e++ +l++gWk+r + GRMZM2G157679_P02 706 PRDNEQRLLIESALFGREAINVISCEGLERMERPETYKQWQVRYQRAGFRQLPINQDIMKRAREKVRCYHKD-FLIDEDNRWLLQGWKGRIV 796 **********************************************************************77.******************* PP GRAS 368 vsvSaWr 374 +++S W+ GRMZM2G157679_P02 797 LALSTWK 803 ******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 68.66 | 407 | 784 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-116 | 434 | 803 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 812 aa Download sequence Send to blast |
MVMDAGLHEP CALLPGSKRD SHMLVYPQIA AAANGFTAQE LESLLFLSSD GITLAAGSGG 60 GGGGGSYLNV APTTVVPPAP TNRASPPRDV SAAPPSVGQP DDSEAFSDIV LGYINRMLMA 120 EDIDDKFEHY PEHPAVLAAE KPFLEILAER PSSSGGSAVE SPGGSSVGNS CYSARSCTCA 180 TATAASDAFG AVLTPALDFP SAAFLQPPQL YQDLSPEGSV VDAGGAWPYD STEFYQLHSN 240 PSSFASSNGS CATISDGFES LLSSPGVMPD VGFTDFAVQS QQAMQFCRGF EEASKFLPDE 300 SKLVIDLEKP ASVTSLVANI KGENRFAEVK AEKADVQAEI HRGKKHFYGD DLDAEEGRRS 360 KHSAPAIDTD HLVREMMDKV LLCNGETCSK GVKELREALQ HDVAKNSHGV HGKGSGHGKG 420 RGKKQPKKEV VDLETLLVHC AQSVATDDRR GATELLKQIR QHASPNGDGD QRLAHCFANG 480 LEARLAGNGS QIYKSLIMTR FPCTDVLKAY QLYLAACPFK KISHFFANQT IMNAVEKAKK 540 VHIVDYGIYY GFQWPCLIQR LSTRPGGPPR LRITAIDTPH PGFRPAERIE ETGRYLKDYA 600 ETFNVPFEFR AIPSRFEAVQ IEDLHIAKDE LLIVNSMFKF KTLMDESVVA ESPRNMVLST 660 IRKMNPHLFI HGIINGSYNA PFFASRFREA LYHYSAIFDM LETNIPRDNE QRLLIESALF 720 GREAINVISC EGLERMERPE TYKQWQVRYQ RAGFRQLPIN QDIMKRAREK VRCYHKDFLI 780 DEDNRWLLQG WKGRIVLALS TWKPDHRSST AL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 4e-51 | 437 | 803 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.85014 | 0.0 | aerial organ| ear| endosperm| leaf| pollen| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G157679 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G157679_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054401 | 0.0 | BT054401.1 Zea mays full-length cDNA clone ZM_BFc0031I09 mRNA, complete cds. | |||
GenBank | BT061445 | 0.0 | BT061445.1 Zea mays full-length cDNA clone ZM_BFb0147E24 mRNA, complete cds. | |||
GenBank | BT066353 | 0.0 | BT066353.1 Zea mays full-length cDNA clone ZM_BFb0375H09 mRNA, complete cds. | |||
GenBank | JX428503 | 0.0 | JX428503.1 Zea mays subsp. mays clone pUT3101 GRAS23 GRAS type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001145998.1 | 0.0 | SCARECROW-like protein | ||||
Refseq | XP_008672704.1 | 0.0 | SCARECROW-like protein isoform X1 | ||||
TrEMBL | B7ZYK9 | 0.0 | B7ZYK9_MAIZE; Uncharacterized protein | ||||
TrEMBL | K0D9R0 | 0.0 | K0D9R0_MAIZE; GRAS23 GRAS type transcription factor (Fragment) | ||||
STRING | GRMZM2G157679_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12518 | 31 | 37 |
Representative plant | OGRP266 | 15 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-177 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G157679_P02 |