PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G154320_P01 | ||||||||
Common Name | LOC103643737 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | LBD | ||||||||
Protein Properties | Length: 281aa MW: 30137.8 Da PI: 6.9203 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130.5 | 7e-41 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrrkC+++Cv+apyfp ++p kfa vh++FGasnv+kll++l++ +reda++sl+yeA+ar+rdPvyG+v+ i+ lq ++++++ GRMZM2G154320_P01 7 PCAACKLLRRKCTQGCVFAPYFPPDNPGKFASVHRVFGASNVSKLLNDLDQLQREDAVNSLAYEADARIRDPVYGCVAYISVLQMKIKRVRD 98 7******************************************************************************************* PP DUF260 93 elallkee 100 e+a +++e GRMZM2G154320_P01 99 EIANARKE 106 ***99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.153 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-40 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MSSSNSPCAA CKLLRRKCTQ GCVFAPYFPP DNPGKFASVH RVFGASNVSK LLNDLDQLQR 60 EDAVNSLAYE ADARIRDPVY GCVAYISVLQ MKIKRVRDEI ANARKELAAY IGTAAFAPYV 120 ATPQYHHHQY AAGAVPLAVG VGPQHGHPHH QQQQIMVHQH LHHQQQMAAA AEVQQQLAVA 180 VEVAREQDLM MRQAAVYAHA VPSGGPTVAV VPPDALPYEG GFLFQQQPPP SQAQTAVALT 240 YQMEQSPPSS SSGQSHPEVS QQHNTDGSDE GSGGGGVVPP A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-46 | 4 | 110 | 8 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-46 | 4 | 110 | 8 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G154320 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G154320_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063309 | 3e-89 | BT063309.1 Zea mays full-length cDNA clone ZM_BFc0051C02 mRNA, complete cds. | |||
GenBank | KJ727724 | 3e-89 | KJ727724.1 Zea mays clone pUT5664 LOB transcription factor (LOB38) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008665134.1 | 0.0 | LOB domain-containing protein 36 | ||||
TrEMBL | A0A1D6KXT4 | 0.0 | A0A1D6KXT4_MAIZE; LOB domain-containing protein 28 | ||||
STRING | GRMZM2G154320_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6143 | 34 | 56 |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 1e-56 | ASYMMETRIC LEAVES 2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G154320_P01 |
Entrez Gene | 103643737 |