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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G153754_P01 | ||||||||
Common Name | LOC103632001, Zm.133355 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | CPP | ||||||||
Protein Properties | Length: 800aa MW: 84980.7 Da PI: 6.4467 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.6 | 3.8e-16 | 480 | 518 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+C+CkkskClk+YCeCfaag++Cse C+C++C+Nk GRMZM2G153754_P01 480 ACKRCSCKKSKCLKLYCECFAAGVYCSEPCSCQGCMNKP 518 589**********************************96 PP | |||||||
2 | TCR | 49.9 | 6.4e-16 | 565 | 603 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs++C+Ce+CkN GRMZM2G153754_P01 565 RHKRGCNCKKSSCLKKYCECYQGGVGCSSNCRCESCKNA 603 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.2E-17 | 479 | 520 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.188 | 480 | 605 | IPR005172 | CRC domain |
Pfam | PF03638 | 7.5E-12 | 482 | 517 | IPR005172 | CRC domain |
SMART | SM01114 | 1.2E-15 | 565 | 606 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.4E-11 | 567 | 603 | IPR005172 | CRC domain |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 800 aa Download sequence Send to blast |
MDTPDRAAAQ SAATRTEDSP VFSFLNNLSP IEPLRSSAYS TNSLQGFQSI NITSISSIFT 60 SPHDNVSKEP RLPKSPLGEI SDKEVRADAA GTNEPPEPSN AARLFACTST VTRETRTGTC 120 TGVAGPPPTT GGPCDLALPR QFDNNGSPDH NTTPCHGVRS DLKQDKARKL LQAAQNAKKN 180 ALEKRKCLFS TEVRLLDGGG GGGGEPGSDS DGVLGCEWSD LVSPTSAKLL AFDATMDEHH 240 RGVHLAAQNA ESCGYLLSKL AGDGGVSDGA YPTASAQVYY QELVMGEDQS ENAAPQMDAQ 300 ETISAEETQD NIYEADVCVP LEYKVVESQQ QRGIRRRCLV FEAAGGFSNS AVKRGTIEDR 360 SVSTCSKGKS PAESQPRGLR GIGLHLNALA LTPKGKMACQ DPPPTASALL PSSASEKDAR 420 GELLCAGENF AHSGGELLEF PLDGCSAGGG FPVNDHHVSG QSVSPQKKRR KTDNGDDGEA 480 CKRCSCKKSK CLKLYCECFA AGVYCSEPCS CQGCMNKPIH EETVLSTRKQ IEFRNPLAFA 540 PKVIRMSDAG LETGEDPNNT PASARHKRGC NCKKSSCLKK YCECYQGGVG CSSNCRCESC 600 KNAFGRRDAE TELPEEMKQE ESDQTENPQQ EKENDQQKAN VQGEDHPLLD LVPITPPFDF 660 CSSLLKLPNF SSAKPPRPTK ARSVTSRSSA SKATAAVQPC RSSKLAASAS ASGIDEETPD 720 ILHEPDSLSN CVKTTTSPNG KRVSPPHNAL GSSPNRKGGR KLILKSIPLF PSLTGDTNSG 780 SAMNSTDSAF CASPLTLGPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-15 | 484 | 602 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 2e-15 | 484 | 602 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 466 | 470 | KKRRK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G153754 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00624 | PBM | Transfer from PK22848.1 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G153754_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU970980 | 0.0 | EU970980.1 Zea mays clone 355206 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008652082.1 | 0.0 | protein tesmin/TSO1-like CXC 3 | ||||
TrEMBL | A0A1D6HTF1 | 0.0 | A0A1D6HTF1_MAIZE; Protein tesmin/TSO1-like CXC 2 | ||||
STRING | GRMZM2G153754_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6147 | 34 | 47 | Representative plant | OGRP993 | 17 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 2e-76 | TESMIN/TSO1-like CXC 2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G153754_P01 |
Entrez Gene | 103632001 |