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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G149940_P01 |
Common Name | LOC100286038 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
B3 |
Protein Properties |
Length: 439aa MW: 48088.4 Da PI: 6.463 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G149940_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 46 | 9.2e-15 | 306 | 401 | 3 | 95 |
EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
B3 3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
k lt+sdv++ gr+vlpkk ae + + + + l + d e +W++k++y ++ks++y+l+ + eFvk +gL+++D++++++++
GRMZM2G149940_P01 306 KDLTNSDVGNIGRIVLPKKDAEPNlpilED--KDGLILEMDDfELPVVWNFKYRYwpNNKSRMYILE-STGEFVKRHGLQAKDILIIYRNK- 393
789******************999886432..34556777775555*********887888888888.9*******************654. PP
SEE..EEE CS
B3 88 sefelvvk 95
+++++v +
GRMZM2G149940_P01 394 KSGRYVAR 401
77766655 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 439 aa
Download sequence Send
to blast |
MANANGSSTG AGHSDLVRAI SHEQHQAFMA SVPRAAPGGV NVHHQQHFHQ YPAGLIPAPV 60 ALPVHAPVSS QTSPYSAQIA VPPPPPPLIA SPDHRLHSLP PTGCYQLDYS PYGNAAAPSQ 120 QHTSAIRGFA DWGTHSNALM SLAHATSFGN NGSSNINNNG LLHQNLSPYT THTWTTTYVQ 180 RPYNTAVYAP ATMNMLQTPP FHSNSHEKES GAVFSNSFNM APSVTPTSPF QLMSPSSTNY 240 TSTQIFEETN NLEDTSRVFG GGDNESNNSE EPDPKPAVEM EDLNQGNDHT SNKTANCQDY 300 RMVLRKDLTN SDVGNIGRIV LPKKDAEPNL PILEDKDGLI LEMDDFELPV VWNFKYRYWP 360 NNKSRMYILE STGEFVKRHG LQAKDILIIY RNKKSGRYVA RAVKAEDIAP PECECVEAGN 420 PREECGFSVS PSINKKIIT
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
6j9c_A | 2e-33 | 294 | 400 | 3 | 109 | B3 domain-containing transcription factor LEC2 |
6j9c_D | 2e-33 | 294 | 400 | 3 | 109 | B3 domain-containing transcription factor LEC2 |
Search in ModeBase |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | BT043138 | 0.0 | BT043138.2 Zea mays full-length cDNA clone ZM_BFc0107M18 mRNA, complete cds. |