PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G149347_P02
Common NameLOC100282019, Zm.124968
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 319aa    MW: 34534.1 Da    PI: 7.5004
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G149347_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.72.6e-15246270226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        ktelC+ + +tGtC+yG++C+FaHg
  GRMZM2G149347_P02 246 KTELCNKWEETGTCPYGNQCQFAHG 270
                        9***********************8 PP
2zf-CCCH19.81.4e-06283308126
                        --S---SGGGGTS.--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaHg 26 
                        ykte Cr  ++ G  C+yG rC+F H+
  GRMZM2G149347_P02 283 YKTEVCRMVLA-GvVCPYGHRCHFRHS 308
                        9**********.66**********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.3E-18239277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-10241276IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.272244272IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-8244271IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-12246270IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-11278308IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-8279309IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-4282309IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.131282310IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEVVLAPAQH DGLHAAFGPN PFDIGVGGDG RFSSSLSSLG GDRFCGYSTT ASLFVNSPGL  60
SSPSPRADSL SRGSSDSGSV VDDGDDAAAT AASVAERRLR LARLALQYQE VVNRFELCLS  120
YLADAINEAA ALRQENDELR VANEYLARRI NVVGGRLADE FSGLRLAEEH TTPPPLSPLP  180
AAPVMPKSIS VRSPGYLKMV QNGKHRASKP TKGSQRVLVG MEGGVKEEEK LNGGLQFEVY  240
NQGMLKTELC NKWEETGTCP YGNQCQFAHG IAELRPVIRH PRYKTEVCRM VLAGVVCPYG  300
HRCHFRHSIT PADLFLPRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-23246308567Butyrate response factor 2
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G149347
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G149347_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9592350.0EU959235.1 Zea mays clone 212775 nucleic acid binding f mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008647834.10.0nucleic acid binding f isoform X1
SwissprotQ6L5G11e-102C3H39_ORYSJ; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A1D6MDK00.0A0A1D6MDK0_MAIZE; Zinc finger CCCH domain-containing protein 14
STRINGGRMZM2G149347_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Representative plantOGRP20581636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-55C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]