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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G149347_P02 | ||||||||
Common Name | LOC100282019, Zm.124968 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C3H | ||||||||
Protein Properties | Length: 319aa MW: 34534.1 Da PI: 7.5004 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 47.7 | 2.6e-15 | 246 | 270 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ + +tGtC+yG++C+FaHg GRMZM2G149347_P02 246 KTELCNKWEETGTCPYGNQCQFAHG 270 9***********************8 PP | |||||||
2 | zf-CCCH | 19.8 | 1.4e-06 | 283 | 308 | 1 | 26 |
--S---SGGGGTS.--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHg 26 ykte Cr ++ G C+yG rC+F H+ GRMZM2G149347_P02 283 YKTEVCRMVLA-GvVCPYGHRCHFRHS 308 9**********.66**********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-18 | 239 | 277 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-10 | 241 | 276 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.272 | 244 | 272 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-8 | 244 | 271 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.4E-12 | 246 | 270 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-11 | 278 | 308 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-8 | 279 | 309 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.8E-4 | 282 | 309 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.131 | 282 | 310 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MEVVLAPAQH DGLHAAFGPN PFDIGVGGDG RFSSSLSSLG GDRFCGYSTT ASLFVNSPGL 60 SSPSPRADSL SRGSSDSGSV VDDGDDAAAT AASVAERRLR LARLALQYQE VVNRFELCLS 120 YLADAINEAA ALRQENDELR VANEYLARRI NVVGGRLADE FSGLRLAEEH TTPPPLSPLP 180 AAPVMPKSIS VRSPGYLKMV QNGKHRASKP TKGSQRVLVG MEGGVKEEEK LNGGLQFEVY 240 NQGMLKTELC NKWEETGTCP YGNQCQFAHG IAELRPVIRH PRYKTEVCRM VLAGVVCPYG 300 HRCHFRHSIT PADLFLPRP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 3e-23 | 246 | 308 | 5 | 67 | Butyrate response factor 2 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G149347 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G149347_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU959235 | 0.0 | EU959235.1 Zea mays clone 212775 nucleic acid binding f mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008647834.1 | 0.0 | nucleic acid binding f isoform X1 | ||||
Swissprot | Q6L5G1 | 1e-102 | C3H39_ORYSJ; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | A0A1D6MDK0 | 0.0 | A0A1D6MDK0_MAIZE; Zinc finger CCCH domain-containing protein 14 | ||||
STRING | GRMZM2G149347_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2775 | 37 | 84 |
Representative plant | OGRP2058 | 16 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 3e-55 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G149347_P02 |
Entrez Gene | 100282019 |
Publications ? help Back to Top | |||
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