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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G148693_P02 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
MIKC_MADS |
Protein Properties |
Length: 305aa MW: 34843.9 Da PI: 9.1962 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G148693_P02 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 101.6 | 2.9e-32 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtfskRrng+lKKA+E+SvLCdaevavi+fs++gklyey++
GRMZM2G148693_P02 9 KRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYAT 59
79***********************************************86 PP
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2 | K-box | 110.1 | 2.4e-36 | 128 | 213 | 15 | 100 |
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
++++e++kLk++ie++q+ ++hl+GedLesL+ keLqqLeqqLe+slk+iRs+K++l+ e+i+elqkke++lqeenkaL+k+l+e
GRMZM2G148693_P02 128 GNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNPKELQQLEQQLESSLKHIRSRKSHLMAESISELQKKERSLQEENKALQKELAE 213
58********************************************************************************9986 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 5.5E-43 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.095 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.13E-44 | 2 | 76 | No hit | No description |
SuperFamily | SSF55455 | 4.84E-35 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 17.761 | 127 | 217 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.6E-30 | 129 | 211 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 305 aa
Download sequence Send
to blast |
MGRGKVQLKR IENKINRQVT FSKRRNGLLK KAHEISVLCD AEVAVIVFSP KGKLYEYATD 60 SRMDKILERY ERYSYAEKAL ISAESESESS KFEVKCLPLS VITITLYETA NISRPQNNWL 120 CPLAPCMGNW CHEYRKLKAK IETIQKCHKH LMGEDLESLN PKELQQLEQQ LESSLKHIRS 180 RKSHLMAESI SELQKKERSL QEENKALQKE LAERQKAVAS RQQQVQWDQQ THAQAQTSSS 240 SSSFMMRQDQ QGLPPPHNIC FPPLTMGDRG EELAAAAQQQ PLPGQAQPQL RIAGLPPWML 300 SHLNA
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3mu6_A | 3e-20 | 2 | 73 | 1 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_B | 3e-20 | 2 | 73 | 1 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_C | 3e-20 | 2 | 73 | 1 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_D | 3e-20 | 2 | 73 | 1 | 71 | Myocyte-specific enhancer factor 2A |
6byy_A | 7e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 7e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 7e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 7e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 6e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 6e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 6e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 6e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in the floral meristem at very early stage of the spikelet (rice flower) development. Expressed in lemmas, paleas and lodicules from early to late stage of flower development. {ECO:0000269|PubMed:10945340}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT033167 | 0.0 | BT033167.1 Zea mays full-length cDNA clone ZM_BFb0107L06 mRNA, complete cds. |
Publications
? help Back to Top |
- Cai Q, et al.
[PAEs in composts of municipal sludge and rice straw]. Ying Yong Sheng Tai Xue Bao, 2003. 14(11): p. 1993-6 [PMID:14997664] - Wang K, et al.
DEP and AFO regulate reproductive habit in rice. PLoS Genet., 2010. 6(1): p. e1000818 [PMID:20107517] - Kobayashi K, et al.
Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene. Plant Cell, 2012. 24(5): p. 1848-59 [PMID:22570445] - Ramanujam R,Yishi X,Liu H,Naqvi NI
Structure-function analysis of Rgs1 in Magnaporthe oryzae: role of DEP domains in subcellular targeting. PLoS ONE, 2012. 7(7): p. e41084 [PMID:22927898] - Ang TN,Ngoh GC,Chua AS,Lee MG
Elucidation of the effect of ionic liquid pretreatment on rice husk via structural analyses. Biotechnol Biofuels, 2012. 5(1): p. 67 [PMID:22958710] - Zhang G,Huang K,Jiang X,Huang D,Yang Y
Acetylation of rice straw for thermoplastic applications. Carbohydr Polym, 2013. 96(1): p. 218-26 [PMID:23688473] - Wei X, et al.
Fine mapping of BH1, a gene controlling lemma and palea development in rice. Plant Cell Rep., 2013. 32(9): p. 1455-63 [PMID:23689259] - Hu S, et al.
A point mutation in the zinc finger motif of RID1/EHD2/OsID1 protein leads to outstanding yield-related traits in japonica rice variety Wuyunjing 7. Rice (N Y), 2013. 6(1): p. 24 [PMID:24280027] - Ji Y, et al.
A comprehensive assessment of human exposure to phthalates from environmental media and food in Tianjin, China. J. Hazard. Mater., 2014. 279: p. 133-40 [PMID:25051237] - Huang Y, et al.
Phthalates in Commercial Chinese Rice Wines: Concentrations and the Cumulative Risk Assessment to Adult Males in Shanghai. Biomed. Environ. Sci., 2014. 27(10): p. 819-23 [PMID:25341819] - Tamaki S, et al.
FT-like proteins induce transposon silencing in the shoot apex during floral induction in rice. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(8): p. E901-10 [PMID:25675495] - Wu F, et al.
The ABCs of flower development: mutational analysis of AP1/FUL-like genes in rice provides evidence for a homeotic (A)-function in grasses. Plant J., 2017. 89(2): p. 310-324 [PMID:27689766]
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