PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G148506_P01
Common NameZEAMMB73_822255
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family E2F/DP
Protein Properties Length: 293aa    MW: 32487.3 Da    PI: 10.112
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G148506_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP38.61.8e-121431861159
            E2F_TDP  11 qkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnli 59 
                        ++f+ l+++ + + + l+e+ak L    v  +rRRiYDi+NVLe+++ +
  GRMZM2G148506_P01 143 TSFMVLYNRDNVESIGLDEAAKCL---GV--ERRRIYDIVNVLEGVGHV 186
                        578999999888************...**..**************9866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.94E-8138186IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013729.3E-6139255IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.9E-12142185IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.1E-9144186IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:3.30.200.209.9E-7245268No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009074anatomystyle
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDVDSRMATE SDSDSDARGG SGFGSETPTA SSSPSVVSLA PTASSSPSPS THPTPRRTTA  60
RSRPSSRRWR APRPGDRPLA RGEALPCPSL NHVLPPPPST LPPHIPRTPR DEFVHARVWI  120
RGWSPRCSRM MVSVMSLLKT ELTSFMVLYN RDNVESIGLD EAAKCLGVER RRIYDIVNVL  180
EGVGHVAPPL RICLYDNCHP RIPNRRCPPL TRFLTSLTGD FSKGYNKWWS RNPNGVPLES  240
LGYKQAGIPH LKWFGVEGQY NVMVIDLLGP SLKGLFNYCS RKFSLKIVLM LAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3sv0_A2e-1724729364110Casein kinase I-like
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.828194e-61aerial organ| ear| endosperm| meristem| pericarp| pollen| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G148506
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G148506_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5309510.0AY530951.1 Zea mays putative growth-regulating factor 1 (Z214A02.12), putative 40S ribosomal protein S8 (Z214A02.25), and putative casein kinase I (Z214A02.27) genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ6QP491e-161Q6QP49_MAIZE; Putative casein kinase I
STRINGGRMZM2G169709_P011e-162(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.16e-14DP-E2F-like 1