PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G147623_P02
Common NameC3H10, LOC103646885
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 853aa    MW: 92585.1 Da    PI: 5.4174
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G147623_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.79.6e-095684125
                       --S---SGGGGTS....--TTTTT-SS-S CS
            zf-CCCH  1 yktelCrffartG....tCkyGdrCkFaH 25
                       +kt+lC+ff+r G     C++Gd+C++aH
  GRMZM2G147623_P02 56 WKTSLCSFFRRRGagaeGCSHGDSCRYAH 84
                       8**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.2E-135092IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.55E-65291IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-45586IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8175587IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-65684IPR000571Zinc finger, CCCH-type
CDDcd005903.19E-6132197No hitNo description
Gene3DG3DSA:3.30.70.3305.1E-6135200IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549281.37E-6135205IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168742.959250853IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533351.17E-46252278IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.17E-46310414IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.17E-46485601IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1504.5E-62498601IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138473.8E-9541600IPR025714Methyltransferase domain
CDDcd024404.54E-7547601No hitNo description
Gene3DG3DSA:3.40.50.1504.5E-62736793IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.17E-46741853IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059581.7E-6744787IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300749781IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1504.5E-62828853IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001510Biological ProcessRNA methylation
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 853 aa     Download sequence    Send to blast
MEDVLTPPPQ PELAGEKRKR EESSLDASIE DAPSAPASTC SAEDAAGSDV ARHPMWKTSL  60
CSFFRRRGAG AEGCSHGDSC RYAHTEEELR PRPDGTWDPT SDRAKELRKV AAEAQEEAEE  120
EVTVDEQSLD KCLVGLPRGW TADRLKSLLQ DQGISYATAK KKKGMTVGFV TFQSVEQLTN  180
AVQVLKENPS DGKQIKIVDA NRRSHQKAHA GAPVSNTGTA TENGSSPTTP AEETSVPESV  240
SSSKKGARDA VTPLAHMTYI DQLEHKKQSM AQILKKLTRN ARKACPPTIP HPDWVFKSKE  300
IGGLPCKFEG ILESPVVNGY RNKCEFSVGY SLEGKKTVGF MLGNFREGVT AVEEPENCPN  360
VSEISCKYAK MFQDFLQSSS FPLWSKIDNS GFWRQLTVRE GRCPAEAVVS QNAESQISEV  420
MLIVQVCSTS VDEALMKEEF DKLSAALVQG AATCSPPLPL TTIVVQDHKG ISNAAPTDCP  480
LIPLLVPKGD KLDGTSEDKT RIHDHISNLK FSISPTAFFQ VNTLAAERLY ALAGDWANLN  540
SDTLLFDVCC GTGTIGLTLA QRVGMVVGIE MNESAVSDAH RNALINGIKN CRFVCGKAED  600
VMGPLLTEYL GSPQQQAAAS KSNSEIDDTS KTEDMIGCAS YDGENIDSSK QRHDNAEGQQ  660
PMDTSVDHPT CASEVDGMDV VDCNHDENNV ASGEQNCGEA SLINGKPIET SSDNSLEQGK  720
TCKDGSSSPN NNVLAANACQ FKNVVAIVDP PRVGLHPTVI KALRTHPRIR RLVYISCNPD  780
SLVANGIELC TPTPEKQEKN KGNRGWRSMS SAGLARQRTK SMPNSEPFIP KRAMAVDLFP  840
HTPHCEMVML FER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A8e-17502608265371Uncharacterized RNA methyltransferase SP_1029
5xj2_A8e-17502608265371Uncharacterized RNA methyltransferase SP_1029
5xj2_B8e-17502608265371Uncharacterized RNA methyltransferase SP_1029
5xj2_C8e-17502608265371Uncharacterized RNA methyltransferase SP_1029
5xj2_D8e-17502608265371Uncharacterized RNA methyltransferase SP_1029
5zq0_A8e-17502608266372Uncharacterized RNA methyltransferase SP_1029
5zq1_A8e-17502608265371Uncharacterized RNA methyltransferase SP_1029
5zq8_A8e-17502608265371Uncharacterized RNA methyltransferase SP_1029
5zq8_B8e-17502608265371Uncharacterized RNA methyltransferase SP_1029
5zth_A8e-17502608266372Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.679860.0aerial organ| ear| embryo| endosperm| meristem| pericarp| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G147623
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G147623_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269830.0KJ726983.1 Zea mays clone pUT3684 C3H transcription factor (C3H10) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008669735.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A060D5870.0A0A060D587_MAIZE; C3H transcription factor (Fragment)
STRINGGRMZM2G147623_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84933131
Representative plantOGRP60881112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]