PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G147623_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 764aa    MW: 82479.3 Da    PI: 4.8651
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G147623_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.98.4e-095684125
                       --S---SGGGGTS....--TTTTT-SS-S CS
            zf-CCCH  1 yktelCrffartG....tCkyGdrCkFaH 25
                       +kt+lC+ff+r G     C++Gd+C++aH
  GRMZM2G147623_P01 56 WKTSLCSFFRRRGagaeGCSHGDSCRYAH 84
                       8**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.6E-135092IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.16E-65291IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-45586IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8175587IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-65684IPR000571Zinc finger, CCCH-type
CDDcd005902.77E-6132197No hitNo description
Gene3DG3DSA:3.30.70.3304.4E-6135200IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549281.25E-6135205IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168731.624250764IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533352.91E-41252278IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533352.91E-41310414IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533352.91E-41485601IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1501.8E-39498601IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138473.3E-9541600IPR025714Methyltransferase domain
CDDcd024403.94E-7547601No hitNo description
Gene3DG3DSA:3.40.50.1501.8E-39736757IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533352.91E-41741761IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001510Biological ProcessRNA methylation
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MEDVLTPPPQ PELAGEKRKR EESSLDASIE DAPSAPASTC SAEDAAGSDV ARHPMWKTSL  60
CSFFRRRGAG AEGCSHGDSC RYAHTEEELR PRPDGTWDPT SDRAKELRKV AAEAQEEAEE  120
EVTVDEQSLD KCLVGLPRGW TADRLKSLLQ DQGISYATAK KKKGMTVGFV TFQSVEQLTN  180
AVQVLKENPS DGKQIKIVDA NRRSHQKAHA GAPVSNTGTA TENGSSPTTP AEETSVPESV  240
SSSKKGARDA VTPLAHMTYI DQLEHKKQSM AQILKKLTRN ARKACPPTIP HPDWVFKSKE  300
IGGLPCKFEG ILESPVVNGY RNKCEFSVGY SLEGKKTVGF MLGNFREGVT AVEEPENCPN  360
VSEISCKYAK MFQDFLQSSS FPLWSKIDNS GFWRQLTVRE GRCPAEAVVS QNAESQISEV  420
MLIVQVCSTS VDEALMKEEF DKLSAALVQG AATCSPPLPL TTIVVQDHKG ISNAAPTDCP  480
LIPLLVPKGD KLDGTSEDKT RIHDHISNLK FSISPTAFFQ VNTLAAERLY ALAGDWANLN  540
SDTLLFDVCC GTGTIGLTLA QRVGMVVGIE MNESAVSDAH RNALINGIKN CRFVCGKAED  600
VMGPLLTEYL GSPQQQAAAS KSNSEIDDTS KTEDMIGCAS YDGENIDSSK QRHDNAEGQQ  660
PMDTSVDHPT CASEVDGMDV VDCNHDENNV ASGEQNCGEA SLINGKPIET SSDNSLEQGK  720
TCKDGSSSPN NNVLAANACQ FKNVVAIVDP PRVGLHPTVH FLQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj2_A8e-17502608265371Uncharacterized RNA methyltransferase SP_1029
5xj2_B8e-17502608265371Uncharacterized RNA methyltransferase SP_1029
5xj2_C8e-17502608265371Uncharacterized RNA methyltransferase SP_1029
5xj2_D8e-17502608265371Uncharacterized RNA methyltransferase SP_1029
5zq0_A8e-17502608266372Uncharacterized RNA methyltransferase SP_1029
5zq8_A8e-17502608265371Uncharacterized RNA methyltransferase SP_1029
5zq8_B8e-17502608265371Uncharacterized RNA methyltransferase SP_1029
5zth_A8e-17502608266372Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.679860.0aerial organ| ear| embryo| endosperm| meristem| pericarp| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G147623
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G147623_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269830.0KJ726983.1 Zea mays clone pUT3684 C3H transcription factor (C3H10) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008669735.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A1D6EFZ20.0A0A1D6EFZ2_MAIZE; Zinc finger CCCH domain-containing protein 24
STRINGGRMZM2G147623_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.20.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]