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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
GRMZM2G146018_P01 |
| Common Name | GRAS5, LOC103652243 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
| Family |
GRAS |
| Protein Properties |
Length: 492aa MW: 52614.5 Da PI: 4.9922 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GRMZM2G146018_P01 | genome | MaizeSequence | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 196.1 | 2.2e-60 | 118 | 489 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlsel....aspdgd.....pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85
+lL++ A+av+s+d+ a+a+L+r+ + p+ ++ la yf+++L++r+++++ +++a +p + +aa+++++
GRMZM2G146018_P01 118 DLLVAGARAVESRDTISASAILSRIDAIipgvGVPYNGschraAVDHLARYFAQGLRSRMSGECRPTADAPAP------LGRKWMAADRILQ 203
689**********************9985554233333333447778899************55444443333......36678999***** PP
GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiT.gvgspesg.skeeleetgerLakfAeelgvp 175
e+sP+ kf+h+taNqaIle ++ + +vH++D+++++G+QW++L+ La + +R+T +v+ ++++ +++++ +t++rL++fA++lg+p
GRMZM2G146018_P01 204 ELSPFAKFAHFTANQAILEGTADDAAVHVVDLNVGEGAQWASLMSDLARHGSRRKPFRLTeAVVTADADaDAHRMAATARRLSEFADSLGLP 295
************************************************99999999****5455545558********************** PP
GRAS 176 fefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe...adhnse.....sFlerfl 258
f++ l +++ edl + ++++ +++V++ r + sl+ + + +v+ l+Pk+vv +e+e a +n++ +F+ f
GRMZM2G146018_P01 296 FQYGSLRVRSDEDL--HGFATSCcSCSVVVSCDTTDIRSY---SSLT---KLLAGIVRILRPKLVVTTEEEllrAGRNHPgaaaiTFAGFFR 379
*****977766666..555555556678899988766666...3333...3666899**************54433344488899******* PP
GRAS 259 ealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg 348
eal+++ a+++sl++ + + vEre lg+ i+++v + + + + + le GF++ ++s++ ++q ++l ++ g
GRMZM2G146018_P01 380 EALQHFGAVLESLASCFRDAGygACLGLVEREALGPTIQDAVGQYQCA------GSVTGGASLELEGFRAREMSSFSVAQGRMLAGLFS--G 463
*************999865557788899**************988877......55666789**************************9..* PP
GRAS 349 yrveeesgslvlgWkdrpLvsvSaWr 374
+ v + +g l l+Wk+rpL+svS+W+
GRMZM2G146018_P01 464 FGVVHGDGRLALCWKSRPLTSVSVWT 489
*************************6 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 492 aa
Download sequence Send
to blast |
MGTMSYPCSP LIPFPTQHED MGSYLLWSPQ AVIPLENGVM CDGDAGSSPD HHQQQDHDEL 60
MNMLLQEANV LLLQDELSSG DPSSDGFDQR LLVGQGNGGL LLGLGVQEEV MEESSLGDLL 120
VAGARAVESR DTISASAILS RIDAIIPGVG VPYNGSCHRA AVDHLARYFA QGLRSRMSGE 180
CRPTADAPAP LGRKWMAADR ILQELSPFAK FAHFTANQAI LEGTADDAAV HVVDLNVGEG 240
AQWASLMSDL ARHGSRRKPF RLTEAVVTAD ADADAHRMAA TARRLSEFAD SLGLPFQYGS 300
LRVRSDEDLH GFATSCCSCS VVVSCDTTDI RSYSSLTKLL AGIVRILRPK LVVTTEEELL 360
RAGRNHPGAA AITFAGFFRE ALQHFGAVLE SLASCFRDAG YGACLGLVER EALGPTIQDA 420
VGQYQCAGSV TGGASLELEG FRAREMSSFS VAQGRMLAGL FSGFGVVHGD GRLALCWKSR 480
PLTSVSVWTP VW
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ726968 | 0.0 | KJ726968.1 Zea mays clone pUT3669 GRAS transcription factor (GRAS5) gene, partial cds. |
