PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G145690_P02
Common NameZm.41296
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 701aa    MW: 76848.7 Da    PI: 6.5443
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G145690_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox651e-201873156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       +++ +++t+ q+++Le++F+++++p++++r +L+++lgL+ rq+k+WFqNrR+++k
  GRMZM2G145690_P02 18 KKRYHRHTPRQIQQLEAMFKECPHPDENQRMQLSRELGLEPRQIKFWFQNRRTQMK 73
                       678899***********************************************998 PP
2START161.46.6e-512104332206
                        HHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
              START   2 laeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                        +a +a++el+++a+a+e +Wvk    e +n d++ ++f++ ++       ++e +r++g+v+m +  lv  ++d++ +W+e ++    ka t
  GRMZM2G145690_P02 210 MATRAMDELIRMAQAGEHLWVKTGgrEVLNVDTYDSIFAKPDGsfrgpdVHVEGSRETGLVFMSAIGLVDMFMDSS-KWTELFPaivsKART 300
                        5789*******************9999999999999998877799*******************************.*************** PP

                        EEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEE CS
              START  82 levissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtw 166
                        ++v+ +g     + l lm+ el ++sp+vp R+f f+Ry+rq + g w+i+d+Svd++q      ++  R+ +lpSg+li ++++g skvtw
  GRMZM2G145690_P02 301 VDVLVNGmggrsESLLLMYEELHVMSPVVPtREFCFLRYCRQIEHGLWAIADISVDQQQRDARfGAPPSRSCRLPSGCLIADMADGSSKVTW 392
                        ************************************************************999*99999*********************** PP

                        EE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 167 vehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                        veh++ ++r+p h l+r lv sg+a+ga +w+a+lqr ce+
  GRMZM2G145690_P02 393 VEHMEIEDRVPiHLLYRDLVLSGAAFGAHRWLAALQRACER 433
                        ***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.46E-20775IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-221381IPR009057Homeodomain-like
PROSITE profilePS5007118.0581575IPR001356Homeobox domain
SMARTSM003891.4E-191679IPR001356Homeobox domain
CDDcd000861.23E-191776No hitNo description
PfamPF000463.0E-181873IPR001356Homeobox domain
PROSITE patternPS0002705073IPR017970Homeobox, conserved site
PROSITE profilePS5084846.73200436IPR002913START domain
SuperFamilySSF559613.85E-31201434No hitNo description
CDDcd088751.42E-108204432No hitNo description
SMARTSM002347.0E-39209433IPR002913START domain
PfamPF018523.6E-43210433IPR002913START domain
Gene3DG3DSA:3.30.530.207.0E-6313409IPR023393START-like domain
SuperFamilySSF559613.85E-20463693No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MDFGDDVMDG GSDAQRRKKR YHRHTPRQIQ QLEAMFKECP HPDENQRMQL SRELGLEPRQ  60
IKFWFQNRRT QMKAQHERQD NCFLRAENDK IRCENIAMQE ALRNVICPTC GGPPVADDHF  120
DEQKLRMENA RLKEELDRVS SLTSKYLGRP ITQLPSAQAL SMSSLDLSVG GLGGPSLDLD  180
LLSGGSSGYP PFHLLPMAVS EMERPMMAEM ATRAMDELIR MAQAGEHLWV KTGGREVLNV  240
DTYDSIFAKP DGSFRGPDVH VEGSRETGLV FMSAIGLVDM FMDSSKWTEL FPAIVSKART  300
VDVLVNGMGG RSESLLLMYE ELHVMSPVVP TREFCFLRYC RQIEHGLWAI ADISVDQQQR  360
DARFGAPPSR SCRLPSGCLI ADMADGSSKV TWVEHMEIED RVPIHLLYRD LVLSGAAFGA  420
HRWLAALQRA CERCACLATA GIMPHRDIAA AGDISHRELL AVTPEGKRSM MKLSQRMVNS  480
FCASLSASQL HRWTTLSGPN DVGVRVMVHR STDPGQPSGV VLSAATSIWL PVPCDRAFAF  540
VRDEHTRSQW DVLSHGNPVQ EVSRIPNGSH PGNCISLLRG LNASQNSMLI LQESCTDASG  600
SLVVYAPIDI PAANVVMSGE DPSAIPLLPS GFSILPDGRP GASSSRAGQA PSAGSLVTVA  660
FQILVSSLPS AKLNAESVAT VNSLISTTVE QIKAALNCAS H
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.387650.0meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G145690
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G145690_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7285230.0KJ728523.1 Zea mays clone pUT6828 HB transcription factor (HB83) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001310555.10.0uncharacterized protein LOC100502181
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLG2J5S80.0G2J5S8_MAIZE; Homeodomain leucine zipper family IV protein
STRINGGRMZM2G145690_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11