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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G145568_P01 | ||||||||
Common Name | LOC103639277, ZEAMMB73_997490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | LBD | ||||||||
Protein Properties | Length: 239aa MW: 25340.6 Da PI: 5.6978 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130.6 | 6.5e-41 | 64 | 163 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf +h++FGasn++kll++lpe+ r da+ss+vyeAear+rdPvyG++g + +lq+q ++lk+ GRMZM2G145568_P01 64 PCAACKILRRRCADGCVLAPYFPPTEPAKFTTAHRVFGASNIIKLLQDLPESSRADAVSSMVYEAEARLRDPVYGCAGAVCRLQRQANELKV 155 7******************************************************************************************* PP DUF260 93 elallkee 100 +la++++ GRMZM2G145568_P01 156 QLARAQAD 163 ***99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.482 | 63 | 164 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.3E-41 | 64 | 161 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MDDYGNAIVV TGTAAPLKYN CRSVSPPSSV SSSCSPPPPP PPPTPPAAVQ VVVGNVAPTV 60 VLSPCAACKI LRRRCADGCV LAPYFPPTEP AKFTTAHRVF GASNIIKLLQ DLPESSRADA 120 VSSMVYEAEA RLRDPVYGCA GAVCRLQRQA NELKVQLARA QADLLSAQAQ HADLLALFCV 180 EMANRRGNRQ QQQQPSPPTT TVDGGGGSEF GGAAYGQTFY DSDDLDSATW PDHEAQLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-42 | 63 | 165 | 10 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-42 | 63 | 165 | 10 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G145568 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G145568_P01 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU953937 | 0.0 | EU953937.1 Zea mays clone 1449845 LOB domain protein 11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008660255.1 | 1e-175 | LOB domain-containing protein 1 | ||||
Refseq | XP_008660256.1 | 1e-175 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 3e-62 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | K7VEV1 | 1e-174 | K7VEV1_MAIZE; Putative LOB domain-containing family protein | ||||
STRING | GRMZM2G145568_P01 | 1e-175 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 3e-63 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G145568_P01 |
Entrez Gene | 103639277 |