PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G143718_P02 | ||||||||
Common Name | LOC100273363 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | DBB | ||||||||
Protein Properties | Length: 185aa MW: 20617.2 Da PI: 5.7423 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.9 | 8.9e-08 | 3 | 33 | 4 | 34 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 ++C+ +e+ ++ lfC ++ lC+ C ++ H GRMZM2G143718_P02 3 TICDVCESAPAVLFCAADEAALCRPCDEKVH 33 68**************************998 PP | |||||||
2 | zf-B_box | 27.2 | 8e-09 | 52 | 91 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + +C+ +e+ ++ ++Ce +++ lC +C ++ H g H GRMZM2G143718_P02 52 KLVRCDICENSPAFFYCEIDGTSLCLSCDMTVHVGgkrtH 91 6789*****************************6655556 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.9E-9 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.153 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.3E-6 | 3 | 42 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.67E-7 | 3 | 45 | No hit | No description |
SMART | SM00336 | 1.4E-10 | 51 | 96 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.712 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.6E-7 | 52 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.15E-6 | 54 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 185 aa Download sequence Send to blast |
MRTICDVCES APAVLFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLADP NKLVRCDICE 60 NSPAFFYCEI DGTSLCLSCD MTVHVGGKRT HGRYLLLRQR VEFPGDKPGH MDDVPMEIQD 120 PENQRDQKKP PKEQTANHHN GDDPATDGNC DDQGNIDSKM IDLNMRPVRT HGQESNSQVC 180 HAHCD |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.119235 | 0.0 | endosperm| meristem| ovary |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G143718 |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G143718_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT040928 | 0.0 | BT040928.1 Zea mays full-length cDNA clone ZM_BFc0153E05 mRNA, complete cds. | |||
GenBank | EU955839 | 0.0 | EU955839.1 Zea mays clone 1548279 salt tolerance-like protein mRNA, complete cds. | |||
GenBank | KJ727936 | 0.0 | KJ727936.1 Zea mays clone pUT6031 orphans transcription factor (Orphan191) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001141274.1 | 1e-131 | Salt tolerance-like protein | ||||
Swissprot | C0SVM5 | 3e-70 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A3L6E561 | 1e-130 | A0A3L6E561_MAIZE; B-box zinc finger protein 19 | ||||
TrEMBL | B4FUZ0 | 1e-130 | B4FUZ0_MAIZE; B-box zinc finger protein 19 | ||||
STRING | GRMZM2G143718_P01 | 1e-130 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38960.1 | 1e-72 | DBB family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G143718_P02 |