PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G143204_P02
Common NameLOC100191170
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 327aa    MW: 33942.4 Da    PI: 6.1688
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G143204_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.22.5e-26138192159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK vk+s+fpr    Ct ++C+vkk+vers++dp+vv++tYeg+H h+
  GRMZM2G143204_P02 138 LDDGYRWRKYGQKAVKNSPFPR----CTNSKCTVKKRVERSSDDPSVVITTYEGQHCHS 192
                        59*******************6....*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-27123192IPR003657WRKY domain
SuperFamilySSF1182907.72E-23130193IPR003657WRKY domain
PROSITE profilePS5081124.122133194IPR003657WRKY domain
SMARTSM007741.7E-32138193IPR003657WRKY domain
PfamPF031061.5E-19139191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAGAAGDRSE EDVGADWPFG GVDAFTEYSS FFAEPGWPGG LAGELIPVLD LPEAAAPLPA  60
QLSTEPSEEP APARSGDAGA SSSSSGDGAA PGNGDGDDDR KAAPAAEAAG RKPAAKKGQK  120
RARQPRFAFM TKTELDHLDD GYRWRKYGQK AVKNSPFPRC TNSKCTVKKR VERSSDDPSV  180
VITTYEGQHC HSIGPFQRGG GGGAAAARYH SAAAVALAEQ MYSSSTTSSF IPAARQQLFS  240
LPPLHPQSSP PSSETTPPPV VSSVTTTSFQ RANDGDELWR TGTGYGSGVS VAQSPSTPPS  300
VPPPVVSVQK AGLLDDMVPH GVRHGTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-21129193876Probable WRKY transcription factor 4
2lex_A9e-21129193876Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G143204
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G143204_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0687030.0BT068703.1 Zea mays full-length cDNA clone ZM_BFb0369K09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130077.10.0uncharacterized protein LOC100191170
TrEMBLC0PK840.0C0PK84_MAIZE; Uncharacterized protein
STRINGGRMZM2G143204_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.23e-37WRKY DNA-binding protein 57