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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G142999_P01 |
Common Name | ABI38, ZEAMMB73_856314, Zm.133432 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
B3 |
Protein Properties |
Length: 277aa MW: 29872.2 Da PI: 10.4147 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G142999_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 93.8 | 1.2e-29 | 32 | 147 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74
f+kv tpsdv+k++rlv+pk++ae++ gg ++ l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L
GRMZM2G142999_P01 32 FEKVVTPSDVGKLNRLVIPKQHAERYfpaldassaaaaaaaaaaGGG--KGLVLSFEDRAGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKRL 121
99****************************99998888888876444..5679*************************************** PP
-TT-EEEEEE-SS.SEE..EEEEE-S CS
B3 75 kegDfvvFkldgr.sefelvvkvfrk 99
+gD+v+F + ++++++ ++r+
GRMZM2G142999_P01 122 GAGDTVLFARGAGgARGRFFIDFRRR 147
*********88555888889999887 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 277 aa
Download sequence Send
to blast |
MEFTPAHAHA RVVEDSERPR GGVAWVEKEH MFEKVVTPSD VGKLNRLVIP KQHAERYFPA 60 LDASSAAAAA AAAAAGGGKG LVLSFEDRAG KAWRFRYSYW NSSQSYVMTK GWSRFVKEKR 120 LGAGDTVLFA RGAGGARGRF FIDFRRRRQD LAFLQPTLAS AQRLLPLPSV PICPWQDYGA 180 SAPAPNRHVL FLRPQVPAAV VLKSVPVHVA ASAVEATMSK RVRLFGVNLD CPPDAEDSAT 240 VPRGRAASTT LLQLPSPSSS TSSSTAGKDV CCLDLGL
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5os9_A | 9e-51 | 27 | 147 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 9e-51 | 27 | 147 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ726966 | 0.0 | KJ726966.1 Zea mays clone pUT3666 ABI3VP1 transcription factor (ABI38) gene, partial cds. |