PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G142502_P03
Common NameLOC100381642
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 569aa    MW: 62939.3 Da    PI: 5.5601
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G142502_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000596687223
                       EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                       kC++C++ F +  n++rH r+H
  GRMZM2G142502_P03 66 KCTKCSREFCSAINFRRHTRVH 87
                       7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.5776587IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MNASRKSSHL SSKDSAETAR DIITTSGQIQ PLKIPDAVAA LAQAAAKAND LPGWPLFSPP  60
KVQLDKCTKC SREFCSAINF RRHTRVHRRS LKIDRDFPKN RDLLAAFWNK LTVDDASKIL  120
SLTGVVIEGV TGSSILTALS SWMCKPGYAS LPVAYARAGS ELLDLIQAKP SMHLPVSSDE  180
LFSLLDEASE KTFLCTNTAA CIQKFLFDGE VEKIATELKN VVSCASYMLE QKLLEAWCAD  240
KTAEALRCQK LLEDEEEAAQ KRQAELMERK RMKKLRQKEQ RLKNLKDEDA TVQSPEIMDD  300
ATCSTAIQSV NSIYDPDCFE QEESQYLQFP ALITLETDND FNVDLPVEDI SCDLGPEMDK  360
GVVLRQQVVS RHHLGRTEKL AESSILSGSV VTSKHAALAR PSNYKDPNVC SAPSRNKTCE  420
LKLRSEIEEQ CQKHELDVDE RGIGPSKNSR VLIGSIIVAI KDCSEHLLDL GSKNDPVPPN  480
VKTKKHASVK VVQQVTHEGN RNEGVPDSDN RSSLSVTTDE ISYSTCCDAD LAVDEHLQCT  540
TFSSEEATAF LSQRWKEAIA ADHVKLVVS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267274ERKRMKKL
2272282KKLRQKEQRLK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.190470.0ear| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G142502
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G142502_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0618680.0BT061868.1 Zea mays full-length cDNA clone ZM_BFb0191I11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001167928.10.0uncharacterized protein LOC100381642
TrEMBLC0HHR20.0C0HHR2_MAIZE; C2H2-like zinc finger protein
STRINGGRMZM2G142502_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-103C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]