PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G141299_P03 | ||||||||
Common Name | Zm.17359 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WRKY | ||||||||
Protein Properties | Length: 200aa MW: 22007.3 Da PI: 4.2912 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 49 | 1.2e-15 | 2 | 41 | 21 | 59 |
-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 21 prsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 r+YYrC+s+ gCp++k+vers+ dp+++ +tY+ eHnhe GRMZM2G141299_P03 2 CRGYYRCSSSkGCPARKQVERSHADPTALLVTYTFEHNHE 41 69******998****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 19.589 | 1 | 43 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.5E-15 | 2 | 43 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.22E-12 | 2 | 43 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.5E-8 | 3 | 42 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-13 | 3 | 41 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MCRGYYRCSS SKGCPARKQV ERSHADPTAL LVTYTFEHNH EAPQPKTSGG SCCHQQGKPS 60 ARPPAPKPEP SVVLVQRDEL GPEHELVETE VPEQEQETEP EEEHEPAEEG VPCLAGPEAA 120 ATLTVAPAAE EDESFDFGWF DQYPTWHRSA LYAPLLPPEE WERELQGEDA LFAGLGELPE 180 CAVVFGRRRE LSLAATAPCS |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G141299 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G141299_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU953703 | 0.0 | EU953703.1 Zea mays clone 1444502 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008675050.1 | 1e-140 | probable WRKY transcription factor 65 | ||||
TrEMBL | A0A060D2Q8 | 1e-138 | A0A060D2Q8_MAIZE; Putative WRKY transcription factor 69 (Fragment) | ||||
TrEMBL | A0A3L6FJ17 | 1e-138 | A0A3L6FJ17_MAIZE; Putative WRKY transcription factor 65 | ||||
STRING | GRMZM2G141299_P01 | 1e-139 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 2e-17 | WRKY DNA-binding protein 65 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G141299_P03 |