PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G141031_P01 | ||||||||
Common Name | LOC100383692 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 481aa MW: 51624.4 Da PI: 8.5083 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.1 | 1.7e-06 | 50 | 72 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg+ F r nL+ H r+H GRMZM2G141031_P01 50 YVCEICGQGFQRDQNLQMHRRRH 72 9*********************9 PP | |||||||
2 | zf-C2H2 | 11.7 | 0.00081 | 129 | 150 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C C+k + +s++k H++t+ GRMZM2G141031_P01 129 ACARCSKAYAVHSDYKAHLKTC 150 6*******************98 PP | |||||||
3 | zf-C2H2 | 10.8 | 0.0015 | 158 | 176 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ t+ GRMZM2G141031_P01 158 DCGRVFSRVESFIEHQDTC 176 9***************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.97E-6 | 49 | 72 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.7E-5 | 49 | 72 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0032 | 50 | 72 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.635 | 50 | 72 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 52 | 72 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 92 | 122 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.9E-4 | 119 | 149 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.97E-6 | 123 | 148 | No hit | No description |
SMART | SM00355 | 230 | 128 | 155 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence Send to blast |
MVANKLGADS EIDPSILQHV VTPGTPLLAA DPDAEVVSLS PRTLLESDRY VCEICGQGFQ 60 RDQNLQMHRR RHKVPWKLLK REAGEAARKR VFVCPEPSCL HHNPSHALGD LVGIKKHFRR 120 KHSGQRQWAC ARCSKAYAVH SDYKAHLKTC GTRGHSCDCG RVFSRVESFI EHQDTCNAGR 180 ARADPSPACG AGSTGVAAAS AGSQPQAPPP MSLSRTASST SPSSDIVISP VAAWPGSSAP 240 TIPSPATAAF HRFEQVPSPR TPPSDHHHRG GHNLELQLMP PSGSGVVGRG APGVAEYGVA 300 PRTPAAPPQS HPATMQLQLS IGVCGGGGFG DEAMLAAARE KEEVEAREQL RQAVAEKAAA 360 NEARAQARRH AELAEQELAS AKRMRRQAQV ELSRAHALRE HAVRQVNATL LQITCLGCRH 420 KFRARPQLLD AALGAPEVTC SYMSSVVTEG GDAEADDEPP LDGRDGMLQR RRHAMAMDVI 480 L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-18 | 124 | 178 | 3 | 57 | Zinc finger protein JACKDAW |
5b3h_F | 4e-18 | 124 | 178 | 3 | 57 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.32122 | 0.0 | embryo| meristem| ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G141031 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G141031_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068052 | 0.0 | BT068052.1 Zea mays full-length cDNA clone ZM_BFb0036L04 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002460306.1 | 0.0 | protein indeterminate-domain 16 | ||||
TrEMBL | A0A1D6I5M1 | 0.0 | A0A1D6I5M1_MAIZE; Protein SHOOT GRAVITROPISM 5 | ||||
STRING | GRMZM2G141031_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1051 | 38 | 124 |
Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68130.1 | 5e-97 | indeterminate(ID)-domain 14 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G141031_P01 |