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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
GRMZM2G136887_P02 |
| Common Name | SMH1, ZEAMMB73_836537 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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| Family |
MYB_related |
| Protein Properties |
Length: 299aa MW: 32576.4 Da PI: 9.6745 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GRMZM2G136887_P02 | genome | MaizeSequence | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 43.2 | 8.9e-14 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
++rWT+eE+ l+ +v+++G+g W+tI r R+ ++k++w+++
GRMZM2G136887_P02 5 KQRWTPEEEAALKAGVAKHGPGKWRTILRDSDfsallRLRSNVDLKDKWRNL 56
79***********************************99***********96 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006334 | Biological Process | nucleosome assembly |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0000781 | Cellular Component | chromosome, telomeric region |
| GO:0000786 | Cellular Component | nucleosome |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003691 | Molecular Function | double-stranded telomeric DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| GO:0043047 | Molecular Function | single-stranded telomeric DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 299 aa
Download sequence Send
to blast |
MGAPKQRWTP EEEAALKAGV AKHGPGKWRT ILRDSDFSAL LRLRSNVDLK DKWRNLSVTA 60
GGYGSREKAR MALKKGRRVV PKLTAEPMDV DVKDMDDAHD TAIDVEPLAM AFESLPTEES 120
PDKSVARLDD LILEAIRKLK EPSGPSKAAI AAYIEDQYWP PADFQRLLST KLKALVNSGK 180
LIKVNQKYRI APSPPPSGRI GTKVSSAEGM KAENNNAKRL TKHQVIAELE KMKGMTKEEA 240
AAFAAKAVAE AEVAIAEAEE AARVAEAAEN DAEAAKAFLD AVTLSMRNRN AASMMLRAC
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| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Zm.79683 | 0.0 | cell culture| ear| meristem| ovary| root| shoot |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:14576282}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Binds preferentially double-stranded telomeric repeats 5'-TTTAGGG-3', but can also bind to the single G-rich and C-rich telomeric strand. {ECO:0000269|PubMed:14576282}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY271659 | 0.0 | AY271659.1 Zea mays single myb histone 1 (Smh1) mRNA, complete cds. |
| GenBank | BT042177 | 0.0 | BT042177.1 Zea mays full-length cDNA clone ZM_BFb0153F14 mRNA, complete cds. |
| Publications
? help Back to Top |
- Marian CO, et al.
The maize Single myb histone 1 gene, Smh1, belongs to a novel gene family and encodes a protein that binds telomere DNA repeats in vitro.
Plant Physiol., 2003. 133(3): p. 1336-50
[PMID:14576282] - Alexandrov NN, et al.
Insights into corn genes derived from large-scale cDNA sequencing.
Plant Mol. Biol., 2009. 69(1-2): p. 179-94
[PMID:18937034] - Soderlund C, et al.
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
PLoS Genet., 2009. 5(11): p. e1000740
[PMID:19936069] - Schnable PS, et al.
The B73 maize genome: complexity, diversity, and dynamics.
Science, 2009. 326(5956): p. 1112-5
[PMID:19965430]
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