PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G134439_P01
Common NameZm.124132
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 510aa    MW: 56488.6 Da    PI: 9.027
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G134439_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.99.7e-22418497186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        +W+ +e++ Li++r em+e++++ k ++ lW+e+s+ m  +g++r+p qCk+ w +l ++y++ k++e+       +t+pyf+ ++
  GRMZM2G134439_P01 418 KWKPEEIKSLIQMRGEMNEKFQSVKGRMVLWKEISDTMLNQGVSRTPAQCKSLWTSLVQKYEESKDTESM------KTWPYFSAMD 497
                        7*******************************************************************97......58******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF562812.5E-145136IPR001279Metallo-beta-lactamase
PfamPF075219.0E-879108IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500907.898411475IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-5414477IPR009057Homeodomain-like
SMARTSM007170.0085415477IPR001005SANT/Myb domain
PfamPF138373.0E-18416499No hitNo description
CDDcd122034.69E-21417482No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009942Biological Processlongitudinal axis specification
GO:0060918Biological Processauxin transport
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MDAYAPKDLL VVTTGSQGEP RAALNLASYG GSHALKLSKE DVLLYSAKVI PGNETRVMKM  60
MNRLTDLGPK IIMGKDSGLH TSGHAYREEL EEVLRIVKPQ HFLPVHGELL FLKEHELLGR  120
STGIRHTTVI KNGEMLGVSH LRNRRVLSNG FVSLGKEDLQ LMYSDGDKAF GTSTDLCVDE  180
RLRIASDGII FVSMEIFRPQ KEHGLAQSGL KGKFKITTRC LWLDNGRLLD ALYKAAHAAL  240
SSCPVNCPHS HMERMVAEIL RKMVRKYSGK RPDVIAVATE NTTAGFSEHL DTKASGNFGP  300
SSATSHLSRS PATSLEGSYK THPDNPEVDA EEILPETVRT TPDDATTSSN GEALFSSDLH  360
QPKTLEHFWE SFKSPTAVKI ARIVNGGDKQ NFGKIGIMGQ DSLIQSAPAP VKSSKRNKWK  420
PEEIKSLIQM RGEMNEKFQS VKGRMVLWKE ISDTMLNQGV SRTPAQCKSL WTSLVQKYEE  480
SKDTESMKTW PYFSAMDKIL SQQGEMATKG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zq4_A5e-2011196295473RIBONUCLEASE J 1
3zq4_C5e-2011196295473RIBONUCLEASE J 1
3zq4_D5e-2011196295473RIBONUCLEASE J 1
3zq4_E5e-2011196295473RIBONUCLEASE J 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1241320.0endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G134439
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During the early stages of embryo development, first observed at the transition stage. In the heart and torpedo stages, predominantly present in the upper part of embryos. In seedlings, strongly expressed in shoot meristems, hypocotyls, in the vascular bundles of cotyledons, and in the veins of mature leaves. In reproductive organs, detected in inflorescences, especially in sepals, filaments, and stigmas, as well as in mature siliques and seeds. {ECO:0000269|PubMed:25871650}.
UniprotTISSUE SPECIFICITY: Moslty expressed in inflorescences, seedlings, leaves, flowers and flower buds, and, to a lower extent, in stems, siliques and roots. {ECO:0000269|PubMed:25871650}.
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G134439_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0181950.0BT018195.1 Zea mays clone EL01N0559C12.c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645345.10.0uncharacterized protein LOC103626744 isoform X2
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLC5XX000.0C5XX00_SORBI; Uncharacterized protein
STRINGGRMZM2G134439_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49963542
Representative plantOGRP30821521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]