PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

LBD

Protein Properties

Length: 270aa MW: 27738.2 Da PI: 8.3623

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G133806_P02	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.7	1e-43	33	131	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+kl++++++ +redam+sl+yeA++r+rdPvyG+vgvi+ lq++l+ql++ GRMZM2G133806_P02 33 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVRVHRVFGASNVTKLMNEIHPLQREDAMNSLAYEADMRIRDPVYGCVGVISILQHNLRQLQQ 124 7***************************************************************************************** PP DUF260 93 elallke 99 +la++k GRMZM2G133806_P02 125 DLARAKY 131 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.672	32	133	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.4E-43	33	129	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MASSVRAPSG SVIAVASSSS SAALAGVCGT GSPCAACKFL RRKCQPDCVF APYFPPDNPQ 60 KFVRVHRVFG ASNVTKLMNE IHPLQREDAM NSLAYEADMR IRDPVYGCVG VISILQHNLR 120 QLQQDLARAK YELSKYQAAA AAASASTAPT GPQAMAEFIG SAMPNGAAHN FINLGHSAAL 180 GSLGGSTAMF GQQEQFGSNA QMLSRSYDGG EPIARIGMNN GGYEFGYSSA TTMGGSAGAV 240 SGGLGTLGIS SPPFLKSGTA GGDEKPSGGQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-52	29	136	7	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-52	29	136	7	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G133806

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves, leaf primordia, immature ears, immature tassels, whole ovules, silk and husk leaves. {ECO:0000269\|PubMed:17209126}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G133806_P02

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT067836	0.0	BT067836.1 Zea mays full-length cDNA clone ZM_BFc0168M11 mRNA, complete cds.
GenBank	EU962641	0.0	EU962641.1 Zea mays clone 244398 ASYMMETRIC LEAVES2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001105986.2	0.0	protein IAL1
Swissprot	A1YKY7	1e-170	IAL1_MAIZE; Protein IAL1
TrEMBL	B6TCC6	0.0	B6TCC6_MAIZE; ASYMMETRIC LEAVES2
STRING	GRMZM2G133806_P01	0.0	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.4	2e-56	LBD family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G133806_P02
Entrez Gene	100037816 \| 100856931

Publications ? help Back to Top
Evans MM The indeterminate gametophyte1 gene of maize encodes a LOB domain protein required for embryo Sac and leaf development. Plant Cell, 2007. 19(1): p. 46-62 [PMID:17209126] Alexandrov NN, et al. Insights into corn genes derived from large-scale cDNA sequencing. Plant Mol. Biol., 2009. 69(1-2): p. 179-94 [PMID:18937034]