PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G133398_P03 | ||||||||
Common Name | vp1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | B3 | ||||||||
Protein Properties | Length: 691aa MW: 73248.6 Da PI: 6.2499 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.3 | 1.7e-19 | 518 | 614 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 +kvl++sdv+++gr+vlpkk ae h ++k++ ++ + +ed ++r+W++++++ ++ks++y+l+ ++ eFv++n+L+egDf+v++ ++ GRMZM2G133398_P03 518 QKVLKQSDVGSLGRIVLPKKEAEVHlpELKTRDGISIPMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGEFVRSNELQEGDFIVIY--SDv 606 79*************************999***********7778*******99777777777777.********************..555 PP SEE..EEE CS B3 88 sefelvvk 95 ++++++++ GRMZM2G133398_P03 607 KSGKYLIR 614 88877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-27 | 508 | 621 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10015 | 1.89E-32 | 515 | 616 | No hit | No description |
SuperFamily | SSF101936 | 3.01E-22 | 516 | 612 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.3E-18 | 517 | 619 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.532 | 517 | 619 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.1E-16 | 518 | 613 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009657 | Biological Process | plastid organization | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001076 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 691 aa Download sequence Send to blast |
MEASAGSSPP HSQENPPEHG GDMGGAPAEE IGGEAADDFM FAEDTFPSLP DFPCLSSPSS 60 STFSSNSSSN SSSAYTNTAG RAGGEPSEPA SAGEGFDALD DIDQLLDFAS LSMPWDSEPF 120 PGVSMMLENA MSAPPQPVGD GMSEEKAVPE GTTGGEEACM DASEGEELPR FFMEWLTSNR 180 ENISAEDLRG IRLRRSTIEA AAARLGGGRQ GTMQLLKLIL TWVQNHHLQR KRPRDVMEEE 240 AGLHVQLPSP VANPPGYEFP AGGQDMAAGG GTSWMPHQQA FTPPAAYGGD AVYPSAAGQQ 300 YSFHQGPSTS SVVVNSQPFS PPPVGDMHGA NMAWPQQYVP FPPPGASTGS YPMPQPFSPG 360 FGGQYAGAGA GHLSVAPQRM AGVEASATKE ARKKRMARQR RLSCLQQQRS QQLSLGQIQA 420 SVHLQEPSPR STHSGPVTPS AGGWGFWSPS SQQQVQNPLS KSNSSRAPPP SLEAAAVAPQ 480 TKPAPAGARQ DDIHHRLAAA SDKRQGAKAD KNLRFLLQKV LKQSDVGSLG RIVLPKKEAE 540 VHLPELKTRD GISIPMEDIG TSRVWNMRYR FWPNNKSRMY LLENTGEFVR SNELQEGDFI 600 VIYSDVKSGK YLIRGVKVRP PPAQEQGSGS SGGGKHRPLC PAGPGRAAAA GAPEDAVVDG 660 VSGACKGRSP EGVRRVRQQG AGAMSQMAVS I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 7e-37 | 513 | 617 | 1 | 105 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 7e-37 | 513 | 617 | 1 | 105 | B3 domain-containing transcription factor FUS3 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.24 | 0.0 | embryo| endosperm |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G133398 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Between 10 and 30 days after pollination. | |||||
Uniprot | TISSUE SPECIFICITY: Seed. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator specifically required for expression of the maturation program in the seed development. Probably potentiates the response to the seed-specific hormone abscisic acid (ABA). May bind to DNA indirectly. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00083 | PBM | Transfer from AT3G24650 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G133398_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT060994 | 0.0 | BT060994.1 Zea mays full-length cDNA clone ZM_BFb0082K18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105540.1 | 0.0 | regulatory protein viviparous-1 | ||||
Swissprot | P26307 | 0.0 | VIV1_MAIZE; Regulatory protein viviparous-1 | ||||
TrEMBL | A0A1D6N3H6 | 0.0 | A0A1D6N3H6_MAIZE; Regulatory protein viviparous-1 | ||||
TrEMBL | A0A3L6FIZ2 | 0.0 | A0A3L6FIZ2_MAIZE; Regulatory protein viviparous-1 | ||||
STRING | GRMZM2G133398_P03 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7529 | 34 | 43 | Representative plant | OGRP788 | 17 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 5e-67 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G133398_P03 |
Publications ? help Back to Top | |||
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