PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G132756_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 558aa    MW: 59111.9 Da    PI: 6.0547
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G132756_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.0004597115321
                        ETTTTEEESSHHHHHHHHH CS
            zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                        C++Cgk F++ +++ +H r
  GRMZM2G132756_P01  97 CKNCGKEFTSLELFLQHAR 115
                        *****************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.96E-51137No hitNo description
PROSITE profilePS501579.5361436IPR007087Zinc finger, C2H2
SMARTSM003550.961436IPR015880Zinc finger, C2H2-like
PfamPF139120.00131536IPR007087Zinc finger, C2H2
PROSITE patternPS0002801636IPR007087Zinc finger, C2H2
SMARTSM0035513095115IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-9256281IPR007087Zinc finger, C2H2
SuperFamilySSF576678.58E-8256279No hitNo description
SMARTSM003550.13257279IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221257284IPR007087Zinc finger, C2H2
PROSITE patternPS000280259279IPR007087Zinc finger, C2H2
SuperFamilySSF576678.58E-8392419No hitNo description
PROSITE profilePS501579.182397419IPR007087Zinc finger, C2H2
PfamPF139124.7E-11397420IPR007087Zinc finger, C2H2
SMARTSM003553.7397419IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280399419IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MPPSPPPSPP EYKHFCRVCN KGFTCGSALG GHMRAHGPAS DVDGFGVVDD DDGSLDEEGV  60
TRCPGADEWD DAVGTSATHA YALRANPNRL IRSCQLCKNC GKEFTSLELF LQHARCSRSE  120
DEGGGGEEEQ VGSPVPSSSS PPTNADGGGD EDPILATPWS KGKRSRRVGT TEEDPSTSTV  180
GEEEDLAKCL VMLSSSKSNI NDQEANVIAT ITKDDHHHQK QPIPFFTQSQ ESVVAALPSS  240
PLVVPQYISP APRGGVFECK ACKKVFTSHQ ALGGHRASHK KVKGCFAAKF ETSNATESTR  300
HHQVVAVNIA KDGRNNDNGK APAVDEIINA GASASASAHV PGGFATTIVD TNIGTSSDTP  360
RSLYSSMALA PIVEHNPLVE TTLAVAAAQF KKSTKMHECS VCHRLFTSGQ ALGGHKRCHW  420
LTSNTSDPCN TVTASMIPSL TEDFVGGVVK QQFNLQPQPM VVDVPPPVLD LTIAPNATVA  480
HLQPLAVAAP SNVNHQKKDA TRKKYAIDAV MEEEEADSTP AKRAKISDLK DMVSMDGEPT  540
KPWLQVGIGS SSAPGDDS
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G132756
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G132756_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008669046.10.0uncharacterized protein LOC103646103
RefseqXP_008669047.10.0uncharacterized protein LOC103646103
RefseqXP_008669048.10.0uncharacterized protein LOC103646103
TrEMBLA0A1D6E3W40.0A0A1D6E3W4_MAIZE; C2H2-type zinc finger family protein
STRINGGRMZM2G132756_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Representative plantOGRP2521820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.14e-12C2H2-like zinc finger protein