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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G132693_P01 | ||||||||
Common Name | LOB30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | LBD | ||||||||
Protein Properties | Length: 298aa MW: 32356.3 Da PI: 7.7958 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 98.2 | 8.6e-31 | 4 | 104 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C++C+vlr++C+++C+++p++ p++q +++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +PvyG+vg+++++++ql GRMZM2G132693_P01 4 SCNGCRVLRKGCSDNCAIRPCLqwirsPDAQGNATVFLAKFYGRAGLINLITAGPEHVRPAIFRSLLYEACGRMLNPVYGSVGLLWSGNWQL 95 6*************************99**************************************************************** PP DUF260 88 eqlkaelal 96 +q+++e +l GRMZM2G132693_P01 96 CQAAVESVL 104 ****99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038155 | 1.3E-90 | 1 | 297 | IPR017414 | LOB domain-containing protein 10/36/41 |
PROSITE profile | PS50891 | 16.643 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.3E-24 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSDNCA IRPCLQWIRS PDAQGNATVF LAKFYGRAGL INLITAGPEH 60 VRPAIFRSLL YEACGRMLNP VYGSVGLLWS GNWQLCQAAV ESVLRGIPIA QPPPTATAVP 120 PLRSCDIRHV ARREAGRGAV DAGLHRMANS SRGQFKRSGA QHRSADSGSI ELVFSQPSAA 180 SSMLVDIRQA QPLNWAPRHP SPHQYYSASH DDDAVRESDD SKASVDTVDV SHVSQSEPAE 240 PPRESNERAD GLDLTLGLPP TAHKVERLET SSDVDDDQTS HRGEPTKLGF AMADSRAR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G132693 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G132693_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP100502 | 1e-131 | FP100502.1 Phyllostachys edulis cDNA clone: bphyem111j02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008673774.1 | 0.0 | LOB domain-containing protein 40 | ||||
TrEMBL | A0A1D6MM36 | 0.0 | A0A1D6MM36_MAIZE; LOB domain-containing protein 42 | ||||
STRING | GRMZM2G132693_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 | Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67100.1 | 6e-67 | LOB domain-containing protein 40 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G132693_P01 |
Entrez Gene | 103649851 |