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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G132223_P01 | ||||||||
Common Name | LOC103636576, ZEAMMB73_570652 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 165aa MW: 17835.9 Da PI: 10.286 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.8 | 1.5e-19 | 28 | 78 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr+++eIrd ++ ++r++lg+f+t+ eAa a+++a++ l+g+ GRMZM2G132223_P01 28 HYRGVRKRP-WGRYASEIRDpWK----KTRVWLGTFDTPLEAALAYDRAARTLRGA 78 7********.**********883....5*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.6E-31 | 28 | 86 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-22 | 28 | 87 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.654 | 28 | 85 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-12 | 28 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-33 | 28 | 91 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.03E-28 | 29 | 87 | No hit | No description |
PRINTS | PR00367 | 5.6E-10 | 29 | 40 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-10 | 51 | 67 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MDPTPRAVLS HSSSGGAKGG GGGGSHAHYR GVRKRPWGRY ASEIRDPWKK TRVWLGTFDT 60 PLEAALAYDR AARTLRGAKA RTNFPDDHAG QGQLQQQHLR RRQHPPPQHV SFGGVGVDCA 120 SPWHFVCFQT PTTAPATETP STALELGTGR RCGGLPFDLN EAPSC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-21 | 28 | 85 | 5 | 63 | ATERF1 |
3gcc_A | 4e-21 | 28 | 85 | 5 | 63 | ATERF1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G132223 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G132223_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728261 | 2e-92 | KJ728261.1 Zea mays clone pUT6538 AP2-EREBP transcription factor (EREB158) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008657150.1 | 1e-119 | ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A3L6DNY8 | 1e-117 | A0A3L6DNY8_MAIZE; Ethylene-responsive transcription factor 12 | ||||
TrEMBL | K7V473 | 1e-117 | K7V473_MAIZE; Putative AP2/EREBP transcription factor superfamily protein | ||||
STRING | GRMZM2G132223_P01 | 1e-118 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 3e-31 | ERF domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G132223_P01 |
Entrez Gene | 103636576 |