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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G131982_P02 |
Common Name | LOC103646136, Zm.147477 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
DBB |
Protein Properties |
Length: 258aa MW: 27823.7 Da PI: 5.031 |
Description |
DBB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G131982_P02 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 19.3 | 2.4e-06 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
C+ + + ++ fC ++ lC+ C H+ H+
GRMZM2G131982_P02 4 QCDVCTAEAASVFCCADEAALCDACDRRVHRAnklagkHR 43
7*****************************7677777776 PP
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2 | zf-B_box | 21.9 | 3.6e-07 | 61 | 102 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
+++ C+ ++e + lfC++++ lC++C H+ H
GRMZM2G131982_P02 61 KPPLCDICQERRGFLFCKEDRAILCRECDAPVHSAsdmtrrH 102
6899*******9****************99888545555555 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 258 aa
Download sequence Send
to blast |
MKVQCDVCTA EAASVFCCAD EAALCDACDR RVHRANKLAG KHRRFSLLHP CSSSSSSAAH 60 KPPLCDICQE RRGFLFCKED RAILCRECDA PVHSASDMTR RHSRFLLTGV RLSSAPVDSA 120 GPSEEEEQEN SRGPCNDESC SSGSGAGGAT TATASDGSSI SEYLTKTLPG WHVEDFLIDD 180 ASAGDVGACS DGLYQGQNGQ ISGVLQEAYL PWTEREQVQT DVADERASWE RWVPQMHAEF 240 GGGGKRPRAS PSPPCSYW
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU972015 | 0.0 | EU972015.1 Zea mays clone 373486 salt tolerance-like protein mRNA, complete cds. |
Publications
? help Back to Top |
- Xu D, et al.
BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60 [PMID:27325768] - Xu DB, et al.
The G-Protein β Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 in Arabidopsis. Mol Plant, 2017. 10(9): p. 1206-1223 [PMID:28827171] - Xu D,Jiang Y,Li J,Holm M,Deng XW
The B-Box Domain Protein BBX21 Promotes Photomorphogenesis. Plant Physiol., 2018. 176(3): p. 2365-2375 [PMID:29259103] - Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains. Plant Physiol., 2018. 176(4): p. 2963-2976 [PMID:29439209] - Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum. Plant Physiol., 2018. 177(1): p. 369-380 [PMID:29555784] - Kang X, et al.
HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture. Plant Cell Environ., 2018. 41(8): p. 1912-1925 [PMID:29748960]
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